HL_87030.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	1-4	2-3
1	HL_3AM1_002	3AM1	0.3780	2	GNRA variation	B	ASL-truncated tRNA	C	32	U	33	G	36	G	37	cWW
2	HL_1L9A_001	1L9A	0.3633	2	GNRA variation	B	signal recognition particle RNA S domain	G	146	G	147	G	150	C	151	cWW
3	HL_1JID_001	1JID	0.3382	2	GNRA variation	B	HELIX 6 OF HUMAN SRP RNA	G	146	G	147	G	150	C	151	cWW
4	HL_1MFQ_001	1MFQ	0.3619	2	GNRA variation	A	SRP RNA	G	146	G	147	G	150	C	151	cWW
5	HL_1G1X_003	1G1X	0.2454	2	GNRA	E	16S RIBOSOMAL RNA	C	726	G	727	G	730	G	731	cWW
6	HL_6SVS_001	6SVS	0.2284	2	GNRA	A	RNA (79-mer)	C	26	G	27	A	30	G	31	cWW
7	HL_1G1X_005	1G1X	0.2295	2	GNRA	J	16S RIBOSOMAL RNA	C	726	G	727	G	730	G	731	cWW
8	HL_6CZR_087	6CZR	0.2349	2	GNRA	1a	SSU rRNA	C	710	G	711	G	714	G	715	cWW
9	HL_4LFB_016	4LFB	0.2278	2	GNRA	A	SSU rRNA	C	726	G	727	G	730	G	731	cWW
10	HL_5J7L_016	5J7L	0.2220	2	GNRA	AA	SSU rRNA	C	726	G	727	G	730	G	731	cWW
11	HL_4V88_207	4V88	0.2189	2	GNRA	A6	SSU rRNA	C	937	G	938	A	941	G	942	cWW
12	HL_4OQU_004	4OQU	0.1997	2	GNRA	A	SAM-I/IV riboswitch	C	76	G	77	A	80	G	81	cWW
13	HL_6M0X_001	6M0X	0.1820	2	GNRA	B	RNA (71-MER)	C	32	G	33	A	36	G	37	cWW
14	HL_6CZR_090	6CZR	0.2612	2	GNRA	1a	SSU rRNA	C	840	U	841	C	844	G	845	cWW	ntSH
15	HL_6UFG_005	6UFG	0.2899	2	GNRA	A	RNA (166-MER)	C	144	G	145	A	148	G	149	cWW
16	HL_5U3G_001	5U3G	0.1643	2		B	Guanidine-I riboswitch	C	18	G	19	A	22	G	23	cWW
17	HL_4C7O_001	4C7O	0.1585	2	GNRA	E	SRP RNA	C	19	G	20	A	23	G	24	cWW
18	HL_5J7L_190	5J7L	0.0000	2	GNRA	DA	LSU rRNA	U	2356	G	2357	G	2360	G	2361	cWW
19	HL_5J7L_164	5J7L	0.2793	2	GNRA	DA	LSU rRNA	U	1222	G	1223	A	1226	G	1227	cWW
20	HL_7A0S_031	7A0S	0.4000	2	GNRA	X	LSU rRNA	C	1235	G	1236	A	1239	G	1240	cWW
21	HL_4WF9_031	4WF9	0.3327	2	GNRA	X	LSU rRNA	C	1260	G	1261	A	1264	G	1265	cWW
22	HL_3KTW_001	3KTW	0.4420	2	GNRA	C	SRP RNA	U	163	G	164	G	167	G	168	cWW
23	HL_3NDB_001	3NDB	0.5398	2		M	SRP RNA	U	162	G	163	G	166	G	167	cWW
24	HL_7A0S_034	7A0S	0.3856	2	GNRA variation	X	LSU rRNA	C	1376	G	1377	C	1380	G	1381	cWW
25	HL_4V88_222	4V88	0.3184	2	GNRA variation	A6	SSU rRNA	G	1778	U	1779	A	1782	C	1783	cWW
26	HL_7RQB_035	7RQB	0.2672	2	GNRA	1A	LSU rRNA	C	1363	G	1364	A	1367	G	1368	cWW
27	HL_5J7L_167	5J7L	0.2941	2	GNRA	DA	LSU rRNA	C	1363	G	1364	A	1367	G	1368	cWW
28	HL_4WF9_034	4WF9	0.3792	2	GNRA	X	LSU rRNA	C	1400	G	1401	A	1404	G	1405	cWW
29	HL_5HR6_002	5HR6	0.2308	5		C	tRNA	C	31	C	32	C	36	G	39	cWW	ntSW
30	HL_5HR7_005	5HR7	0.1767	5		D	tRNA	C	31	C	32	C	36	G	39	cWW	ntSW
31	HL_6DLR_001	6DLR	0.8215	2	UNCG variation	A	Guanidine-I riboswitch	C	27	U	28	G	31	G	32	cWW	tSW
32	HL_7D81_001	7D81	0.6446	2		A	nadA RNA	C	26	G	27	A	30	G	31	cWW
33	HL_6LAX_002	6LAX	0.2455	2	GNRA	A	SAM-VI (S-adenosyl methionine) riboswitch aptamer	U	42	G	43	A	46	A	47	cWW	ntsS
34	HL_4V88_200	4V88	0.5087	2	GNRA variation	A6	SSU rRNA	C	569	A	570	C	573	G	574	cWW
35	HL_4KJI_001	4KJI	0.5330	4		C	RsmZ-2	G	5	A	6	A	10	C	12	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	8
CGAAGG	5
GGGAGC	3
CUUCGG	2
CGGAAG	2
CCUUUCACG	2
CGAGAG	1
CUAACG	1
UGACGG	1
UGUGAG	1
CGUAAG	1
UGGAGG	1
UGUAGG	1
CGAACG	1
GUGAAC	1
CGACAG	1
UGAAAA	1
CAGCCG	1
GAAGGAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	9
GAAG	5
GGAG	4
UUCG	2
GGAA	2
CUUUCAC	2
GAGA	1
UAAC	1
GACG	1
GUGA	1
GUAA	1
GUAG	1
GAAC	1
UGAA	1
GACA	1
AGCC	1
AAGGAU	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_87030.1 Version HL_87030.1 of this group appears in releases 3.77 to 3.79 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_87030.1 Version HL_87030.1 of this group appears in releases 3.77 to 3.79

Download

Csv

Json