Motif HL_87219.3 Version HL_87219.3 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 2-10 | 3-7 | 3-8 | 4-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WSM_226 | 4WSM | 0.7081 | 1 | 3L | tRNA | G | 63 | G | 64 | U | 65 | U | 66 | C | 67 | A | 68 | A | 69 | U | 71 | C | 72 | C | 73 | cWW | ncWW | ntWH | ||||
| 2 | HL_4V88_208 | 4V88 | 0.3085 | 1 | A6 | SSU rRNA | G | 997 | A | 998 | U | 999 | C | 1000 | A | 1001 | G | 1002 | A | 1003 | A | 1005 | C | 1006 | C | 1007 | cWW | ||||||
| 3 | HL_4LFB_017 | 4LFB | 0.0751 | 1 | A | SSU rRNA | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ncWB | |||||
| 4 | HL_5J7L_017 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ncWB | |||||
| 5 | HL_5J7L_015 | 5J7L | 0.3297 | 0 | AA | SSU rRNA | C | 689 | G | 690 | G | 691 | U | 692 | G | 693 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH | ||||
| 6 | HL_4LFB_015 | 4LFB | 0.3663 | 0 | A | SSU rRNA | C | 689 | G | 690 | G | 691 | U | 692 | G | 693 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH | ||||
| 7 | HL_4V88_206 | 4V88 | 0.4594 | 0 | A6 | SSU rRNA | A | 900 | G | 901 | G | 902 | U | 903 | G | 904 | A | 905 | A | 906 | A | 907 | U | 908 | U | 909 | cWW | ntSH | |||||
| 8 | HL_5TBW_028 | 5TBW | 0.6523 | 0 | 1 | LSU rRNA | G | 1266 | U | 1267 | G | 1268 | U | 1269 | A | 1270 | A | 1271 | C | 1272 | A | 1273 | A | 1274 | C | 1275 | ncWW | ncWW | |||||
| 9 | HL_3R9X_001 | 3R9X | 0.6304 | 0 | C | RNA301 | A | 1513 | G | 1514 | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | C | 1521 | U | 1522 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUAGAUACC | 2 |
| CGGUGAAAUG | 2 |
| GGUUCAAGUCC | 1 |
| GAUCAGAUACC | 1 |
| AGGUGAAAUU | 1 |
| GUGUAACAAC | 1 |
| AGGGGAACCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUGAAAU | 3 |
| AUUAGAUAC | 2 |
| GUUCAAGUC | 1 |
| AUCAGAUAC | 1 |
| UGUAACAA | 1 |
| GGGGAACC | 1 |
- Annotations
- Basepair signature
- cWW-R-tSH-R-R-R-R
- Heat map statistics
- Min 0.07 | Avg 0.52 | Max 0.96
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