Motif HL_87219.3 Version HL_87219.3 of this group appears in releases 3.12 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9	2-10	3-7	3-8	4-8
1	HL_4WSM_226	4WSM	0.7081	1	3L	tRNA	G	63	G	64	U	65	U	66	C	67	A	68	A	69	U	71	C	72	C	73	cWW	ncWW		ntWH
2	HL_4V88_208	4V88	0.3085	1	A6	SSU rRNA	G	997	A	998	U	999	C	1000	A	1001	G	1002	A	1003	A	1005	C	1006	C	1007	cWW
3	HL_4LFB_017	4LFB	0.0751	1	A	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
4	HL_5J7L_017	5J7L	0.0000	1	AA	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
5	HL_5J7L_015	5J7L	0.3297	0	AA	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH			tSH
6	HL_4LFB_015	4LFB	0.3663	0	A	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH			tSH
7	HL_4V88_206	4V88	0.4594	0	A6	SSU rRNA	A	900	G	901	G	902	U	903	G	904	A	905	A	906	A	907	U	908	U	909	cWW				ntSH
8	HL_5TBW_028	5TBW	0.6523	0	1	LSU rRNA	G	1266	U	1267	G	1268	U	1269	A	1270	A	1271	C	1272	A	1273	A	1274	C	1275	ncWW		ncWW
9	HL_3R9X_001	3R9X	0.6304	0	C	RNA301	A	1513	G	1514	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	C	1521	U	1522	cWW	ncWW				ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUUAGAUACC	2
CGGUGAAAUG	2
GGUUCAAGUCC	1
GAUCAGAUACC	1
AGGUGAAAUU	1
GUGUAACAAC	1
AGGGGAACCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGUGAAAU	3
AUUAGAUAC	2
GUUCAAGUC	1
AUCAGAUAC	1
UGUAACAA	1
GGGGAACC	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
Basepair signature: cWW-R-tSH-R-R-R-R
Heat map statistics: Min 0.07 | Avg 0.52 | Max 0.96

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Coloring options: Nucleotide numbers

Motif HL_87219.3 Version HL_87219.3 of this group appears in releases 3.12 to 3.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_87219.3 Version HL_87219.3 of this group appears in releases 3.12 to 3.17

Download

Csv

Json