Motif HL_93727.3 Version HL_93727.3 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-5 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6UFM_004 | 6UFM | 0.6936 | 0 | Pseudoknot geometry | B | G | 13 | C | 14 | C | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | |||
| 2 | HL_4WF9_041 | 4WF9 | 0.6869 | 0 | X | G | 1761 | U | 1762 | U | 1763 | A | 1764 | A | 1765 | C | 1766 | G | 1767 | C | 1768 | cWW | ncWW | ntsS | ||
| 3 | HL_4Y4O_160 | 4Y4O | 0.4972 | 0 | 2A | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ncWW | |||
| 4 | HL_4WF9_053 | 4WF9 | 0.4769 | 0 | GNRA with extra cWW | X | C | 2382 | C | 2383 | U | 2384 | A | 2385 | C | 2386 | A | 2387 | A | 2388 | G | 2389 | cWW | ncWW | ||
| 5 | HL_7A0S_056 | 7A0S | 0.3969 | 0 | GNRA with extra cWW | X | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | ||
| 6 | HL_6PRV_002 | 6PRV | 0.3667 | 0 | GNRA wlth tandem sheared | A | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | U | 1097 | A | 1098 | G | 1099 | cWW | tSH | ||
| 7 | HL_5D8H_002 | 5D8H | 0.3530 | 0 | GNRA wlth tandem sheared | A | C | 1202 | G | 1203 | U | 1204 | A | 1205 | A | 1206 | C | 1207 | A | 1208 | G | 1209 | cWW | tSH | ||
| 8 | HL_1MMS_002 | 1MMS | 0.3509 | 0 | GNRA wlth tandem sheared | C | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | C | 1097 | A | 1098 | G | 1099 | cWW | tSH | ntSHa | |
| 9 | HL_5J7L_154 | 5J7L | 0.2583 | 0 | GNRA wlth tandem sheared | DA | G | 712 | G | 713 | U | 714 | A | 715 | A | 716 | C | 717 | A | 718 | C | 719 | cWW | tSH | ||
| 10 | HL_4WF9_004 | 4WF9 | 0.3739 | 0 | GNRA wlth tandem sheared | X | A | 136 | G | 137 | U | 138 | U | 139 | A | 140 | U | 141 | G | 142 | U | 143 | cWW | |||
| 11 | HL_1E8O_001 | 1E8O | 0.2336 | 0 | GNRA wlth tandem sheared | E | G | 110 | G | 111 | U | 112 | G | 113 | G | 114 | C | 115 | G | 116 | C | 117 | cWW | ntSH | ntSHa | |
| 12 | HL_5AOX_001 | 5AOX | 0.0000 | 0 | GNRA wlth tandem sheared | C | G | 11 | G | 12 | U | 13 | G | 14 | G | 15 | C | 16 | U | 17 | C | 18 | cWW | ntSH | ||
| 13 | HL_3HHN_010 | 3HHN | 0.2705 | 0 | GNRA wlth tandem sheared | E | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH | ||
| 14 | HL_4Y4O_124 | 4Y4O | 0.3095 | 0 | 2A | G | 712 | G | 713 | U | 714 | G | 715 | A | 716 | G | 717 | A | 718 | C | 719 | cWW | ntSH | |||
| 15 | HL_1U9S_003 | 1U9S | 0.3555 | 1 | A | G | 181 | G | 182 | U | 183 | A | 184 | A | 185 | G | 186 | A | 187 | C | 189 | cWW | ||||
| 16 | HL_6CZR_077 | 6CZR | 0.4669 | 1 | GNRA related | 1a | G | 255 | G | 256 | U | 257 | A | 258 | A | 259 | U | 260 | G | 261 | C | 263 | cWW | |||
| 17 | HL_4LFB_006 | 4LFB | 0.3610 | 1 | GNRA related | A | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | U | 264 | G | 265 | C | 267 | cWW | |||
| 18 | HL_5J7L_006 | 5J7L | 0.3691 | 1 | GNRA related | AA | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | C | 264 | G | 265 | C | 267 | cWW | |||
| 19 | HL_4V88_193 | 4V88 | 0.3841 | 1 | GNRA related | A6 | G | 330 | A | 331 | U | 332 | A | 333 | G | 334 | U | 335 | G | 336 | C | 338 | cWW | |||
| 20 | HL_4KQY_003 | 4KQY | 0.4182 | 1 | GNRA wlth tandem sheared | A | C | 94 | U | 95 | C | 96 | G | 97 | A | 98 | A | 99 | C | 100 | G | 102 | cWW | |||
| 21 | HL_4KQY_006 | 4KQY | 0.4182 | 1 | A | C | 94||||4_555 | U | 95||||4_555 | C | 96||||4_555 | G | 97||||4_555 | A | 98||||4_555 | A | 99||||4_555 | C | 100||||4_555 | G | 102||||4_555 | cWW | ||||
| 22 | HL_7A0S_029 | 7A0S | 0.5868 | 0 | X | C | 1103 | G | 1104 | U | 1105 | A | 1106 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAUAG | 2 |
| CGUAACAG | 2 |
| GGUAAUGGC | 2 |
| CUCGAACAG | 2 |
| GCCAUCAC | 1 |
| GUUAACGC | 1 |
| CCUGCAAG | 1 |
| CCUACAAG | 1 |
| CUGACACG | 1 |
| GGUAACAC | 1 |
| AGUUAUGU | 1 |
| GGUGGCGC | 1 |
| GGUGGCUC | 1 |
| GUUAAAAC | 1 |
| GGUGAGAC | 1 |
| GGUAAGAGC | 1 |
| GGUAACGGC | 1 |
| GAUAGUGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAACA | 3 |
| GUAAUA | 2 |
| GUAAUGG | 2 |
| UCGAACA | 2 |
| CCAUCA | 1 |
| UUAACG | 1 |
| CUGCAA | 1 |
| CUACAA | 1 |
| UGACAC | 1 |
| GUUAUG | 1 |
| GUGGCG | 1 |
| GUGGCU | 1 |
| UUAAAA | 1 |
| GUGAGA | 1 |
| GUAAGAG | 1 |
| GUAACGG | 1 |
| AUAGUGG | 1 |
- Annotations
-
- GNRA wlth tandem sheared (9)
- (6)
- GNRA related (4)
- GNRA with extra cWW (2)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-tSH-R-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.50 | Max 0.94
Coloring options: