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Motif IL_11156.5 Version IL_11156.5 of this group appears in releases 3.12 to 3.14

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-41-52-3
1 IL_2QWY_0082QWY0.52510Single stack bendCSAM-II riboswitchU21G22*C43U44A45cWWcWW
2 IL_6FZ0_0016FZ00.54920Single stack bendASAM-V riboswitchU20G21*C46U47A48cWWcWW
3 IL_5TBW_0815TBW0.60390Single stack bend1 LSU rRNAC2094G2095*C1951G1952G1953cWWcWW
4 IL_4Y4O_2664Y4O0.604702A LSU rRNAA2453G2454*C2498C2499U2500cWWcWW
5 IL_4IOA_0854IOA0.56040X LSU rRNAA2432G2433*C2477C2478U2479cWWcWW
6 IL_4WF9_0894WF90.52270Single stack bendX LSU rRNAA2480G2481*C2525C2526U2527cWWcWW
7 IL_5TBW_0355TBW0.54790Single stack bend1 LSU rRNAC969A970*U1111A1112G1113cWWcWW
8 IL_4V9F_0054V9F0.44600Single stack bend0 LSU rRNAC153C154*G182A183G184cWWcWW
9 IL_5TBW_0045TBW0.45680Single stack bend1 LSU rRNAC27C28*G56A57G58cWWcWW
10 IL_5J7L_2495J7L0.42020Single stack bendDA LSU rRNAC183C184*G212A213G214cWWcWW
11 IL_4WF9_0074WF90.40040Single stack bendX LSU rRNAC186C187*G215A216G217cWWcWW
12 IL_4Y4O_1834Y4O0.39280Single stack bend (H)2A LSU rRNAC183C184*G212A213G214cWWcWW
13 IL_4IOA_0054IOA0.36130Single stack bend (H)X LSU rRNAC160U161*A189A190G191cWWcWW
14 IL_5J7L_2665J7L0.44200Single stack bendDA LSU rRNAC837C838*G940A941G942ncWWcWW
15 IL_4Y4O_2014Y4O0.41040Single stack bend (H)2A LSU rRNAC837C838*G940A941G942cWWcWW
16 IL_4WF9_0284WF90.41310Single stack bendX LSU rRNAC882C883*G984A985G986cWWcWW
17 IL_4IOA_0214IOA0.41100Single stack bend (H)X LSU rRNAC850C851*G951A952G953cWWcWW
18 IL_5TBW_0095TBW0.34260Single stack bend1 LSU rRNAU257G258*C163A164A165cWWcWW
19 IL_5TBW_3755TBW0.34380Single stack bendAS 5S rRNAC29G30*C47U48G49cWWcWW
20 IL_5J7L_0445J7L0.45220Single stack bendAA SSU rRNAC998C999*G1041A1042G1043cWWcWW
21 IL_4IOA_0564IOA0.43320Single stack bend (H)X LSU rRNAC1477U1478*A1463A1464G1465ncWWcWWcWW
22 IL_4V9F_0814V9F0.39520Single stack bend0 LSU rRNAC2454A2455*U2436A2437G2438cWWcWW
23 IL_5J7L_0325J7L0.41090Single stack bendAA SSU rRNAC658U659*A746A747G748cWWcWW
24 IL_4LFB_0414LFB0.50540Single stack bendA SSU rRNAC1038C1039*G1002G1003G1003|||AcWWcWW
25 IL_4V83_2364V830.51680Single stack bendCVdomain 3 of PSIC IGR IRES RNAU6172G6173*C6155A6156A6157cWWcWW
26 IL_4IOA_0464IOA0.34291Intercalated cWW (H)X LSU rRNAU1232C1234*G1241A1242G1243cWWcWW
27 IL_2ET8_0012ET80.12201Stack and bulgeA+BRNA (22-mer)G4C6*G41U42C43cWWcWW
28 IL_2O3X_0012O3X0.00001Stack and bulgeA+BRNA (23-mer)G5C7*G42U43C44cWWcWW
29 IL_5VCI_0055VCI0.17810Not an internal loopA+BRNA (22-mer) + RNA (12-mer)G22C1*G13C14C15cWWcWW
30 IL_4WF9_0474WF90.23381Intercalated cWWX LSU rRNAG1257U1259*G1266A1267C1268cWWcWW
31 IL_3MOJ_0043MOJ0.55140Single stack bendA LSU rRNAU2522G2523*C2540A2541A2542cWWcWW
32 IL_5Z1I_0025Z1I0.53012Decoding loop relatedARNA (21-mer)G16||||8_555G19||||8_555*C7G8C9cWWcWW
33 IL_5Z1I_0035Z1I0.53012Decoding loop relatedARNA (21-mer)G16G19*C7||||8_555G8||||8_555C9||||8_555cWWcWW
34 IL_4ZC7_0034ZC70.52682Decoding loop relatedA+BRNA duplexA16G19*C30G31U32ncWWcWW
35 IL_1ZZ5_0011ZZ50.54692Decoding loop relatedA+BRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
36 IL_1ZZ5_0031ZZ50.58422Decoding loop relatedC+DRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
37 IL_2PWT_0032PWT0.54582A+B22-mer of the ribosomal decoding siteG15G18*C28A29C30cWWcWW
38 IL_2PWT_0022PWT0.52832B+A22-mer of the ribosomal decoding siteG37G40*C6A7C8cWWcWW
39 IL_3C3Z_0023C3Z0.52572Decoding loop relatedA+BHIV-1 subtype F genomic RNAG7G10*C15A16C17cWWcWW
40 IL_3C3Z_0033C3Z0.51302Decoding loop relatedB+AHIV-1 subtype F genomic RNAG7G10*C15A16C17cWWcWW
41 IL_2ET8_0022ET80.49812Decoding loop relatedB+ARNA (22-mer)G38G41*C6A7C8cWWcWW
42 IL_2O3X_0022O3X0.51162Decoding loop relatedB+ARNA (23-mer)G39G42*C7A8C9cWWcWW
43 IL_1T0E_0011T0E0.42472Decoding loop relatedA+CRNA (18-mer) + RNA (17-mer)G7G10||A*C16A17C18cWWcWW
44 IL_1ZX7_0031ZX70.36512Decoding loop relatedC+DRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
45 IL_1ZX7_0051ZX70.32222Decoding loop relatedE+FRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
46 IL_2O3X_0032O3X0.37612Decoding loop relatedA+BRNA (23-mer)G16G19*C30A31C32cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAG*CAC11
CC*GAG10
AG*CCU3
CU*AAG3
UG*CAA3
UG*CUA2
CA*UAG2
GUC*GUC2
GAAG*CGC2
CG*CGG1
CG*CUG1
CC*GGG1
UAC*GAG1
GC*GCC1
GAU*GAC1
AAAG*CGU1
CAC*GAAG1
Non-Watson-Crick part of the motif
SequenceCounts
*A18
AA*A11
*C4
*U3
AA*G3
*G2
A*A2
U*U2
A*AA1

Release history

Release3.123.133.14
Date2018-11-162018-12-142019-01-11
StatusUpdated, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single stack bend (19)
  • Decoding loop related (13)
  • Single stack bend (H) (5)
  • (4)
  • Stack and bulge (2)
  • Intercalated cWW (H) (1)
  • Intercalated cWW (1)
  • Not an internal loop (1)
    • Basepair signature
    cWW-R-cWW
    Heat map statistics
    Min 0.06 | Avg 0.53 | Max 0.98
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