Motif IL_15373.1 Version IL_15373.1 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_053 | 1FJG | 0.0000 | 0 | A | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | tSH | tHS | cWw | cWW | |
2 | IL_3B5F_001 | 3B5F | 0.9283 | 0 | A+B | Loop A Substrate strand + 29-mer Loop A and Loop B Ribozyme strand | C | 4 | A | 5 | G | 6 | U | 7 | C | 8 | C | 9 | * | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | cWW | tSH | tHS | ncWWa | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGGAUU*AUGAAG | 1 |
CAGUCC*GAGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGAU*UGAA | 1 |
AGUC*AGAA | 1 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_15373.1 | Only in the parent motif |
---|---|---|---|
IL_34405.1 Compare | IL_3B5F_001 | IL_1FJG_053 | IL_1S72_057 |
IL_61032.1 Compare | IL_1FJG_053 | IL_3B5F_001 |
Children motifs
Child motif | Common motif instances | Only in IL_15373.1 | Only in the child motif |
---|---|---|---|
IL_57193.1 Compare | IL_1FJG_053 | IL_3B5F_001 | IL_2ZJR_026 |
IL_54826.1 Compare | IL_3B5F_001 | IL_1FJG_053 | IL_1S72_057 |
Coloring options: