Motif IL_26410.1 Version IL_26410.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-5 | 5-10 | 6-9 | 7-8 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3F1H_100 | 3F1H | 0.3788 | 0 | A | 23S RRNA | C | 2652 | U | 2653 | A | 2654 | G | 2655 | U | 2656 | A | 2657 | C | 2658 | * | G | 2663 | G | 2664 | A | 2665 | C | 2666 | C | 2667 | G | 2668 | cWW | ncWW | cSH | tWH | tHS | cWW | ||
2 | IL_3F1H_007 | 3F1H | 0.3515 | 0 | A | 23S RRNA | U | 239 | G | 240 | A | 241 | G | 242 | U | 243 | A | 244 | G | 245 | * | C | 253 | G | 254 | A | 255 | A | 256 | A | 257 | G | 258 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
3 | IL_2ZJR_095 | 2ZJR | 0.2738 | 0 | Sarcin-Ricin target in LSU H95; G-bulge (H) | X | LSU rRNA | C | 2631 | U | 2632 | A | 2633 | G | 2634 | U | 2635 | A | 2636 | C | 2637 | * | G | 2642 | G | 2643 | A | 2644 | C | 2645 | C | 2646 | G | 2647 | cWW | ncSH | tWH | tHS | cWW | ||
4 | IL_3DVZ_001 | 3DVZ | 0.2795 | 0 | A | Sarcin/Ricin Domain from E. Coli 23 S rRNA | C | 2652 | U | 2653 | A | 2654 | G | 2655 | U | 2656 | A | 2657 | C | 2658 | * | G | 2663 | G | 2664 | A | 2665 | C | 2666 | C | 2667 | G | 2668 | cWW | cSH | tWH | tHS | cWW | |||
5 | IL_1S72_020 | 1S72 | 0.1455 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | C | 585 | C | 586 | A | 587 | G | 588 | U | 589 | A | 590 | A | 591 | * | U | 567 | G | 568 | A | 569 | C | 570 | C | 571 | G | 572 | cWW | ncWB | cSH | tWH | tHS | cWW | |
6 | IL_1S72_007 | 1S72 | 0.0000 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | U | 210 | U | 211 | A | 212 | G | 213 | U | 214 | A | 215 | A | 216 | * | U | 224 | G | 225 | A | 226 | A | 227 | C | 228 | G | 229 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
7 | IL_1S72_049 | 1S72 | 0.2492 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | A | 1367 | U | 1368 | A | 1369 | G | 1370 | U | 1371 | A | 1372 | G | 1373 | * | U | 2052 | G | 2053 | A | 2054 | A | 2055 | C | 2056 | U | 2057 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
8 | IL_1S72_103 | 1S72 | 0.2598 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 9 | 5S rRNA | G | 75 | G | 76 | A | 77 | G | 78 | U | 79 | A | 80 | C | 81 | * | G | 101 | G | 102 | A | 103 | A | 104 | A | 105 | C | 106 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
9 | IL_1S72_090 | 1S72 | 0.2505 | 0 | 0 | LSU rRNA | A | 2689 | U | 2690 | A | 2691 | G | 2692 | U | 2693 | A | 2694 | C | 2695 | * | G | 2700 | G | 2701 | A | 2702 | A | 2703 | C | 2704 | U | 2705 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUAGUAC*GGACCG | 3 |
UGAGUAG*CGAAAG | 1 |
CCAGUAA*UGACCG | 1 |
UUAGUAA*UGAACG | 1 |
AUAGUAG*UGAACU | 1 |
GGAGUAC*GGAAAC | 1 |
AUAGUAC*GGAACU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAGUA*GACC | 3 |
UAGUA*GAAC | 3 |
GAGUA*GAAA | 2 |
CAGUA*GACC | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_26410.1 | Only in the child motif |
---|---|---|---|
IL_33032.1 Compare | IL_1S72_090, IL_1S72_103, IL_3DVZ_001, IL_1S72_049, IL_1S72_007 | IL_3F1H_007, IL_1S72_020, IL_2ZJR_095, IL_3F1H_100 | IL_2XZM_054, IL_2QBG_012, IL_3PYO_007, IL_1NBS_007 |
IL_58388.1 Compare | IL_1S72_020, IL_2ZJR_095 | IL_1S72_103, IL_3DVZ_001, IL_3F1H_007, IL_1S72_007, IL_1S72_049, IL_1S72_090, IL_3F1H_100 | IL_3PYO_090 |
- Annotations
-
- 7x6 Sarcin-Ricin; G-bulge (H) (4)
- (4)
- Sarcin-Ricin target in LSU H95; G-bulge (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.15 | Avg 0.25 | Max 0.43
Coloring options: