#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 131-132-123-114-55-106-97-8
1 IL_3F1H_1003F1H0.37880A23S RRNAC2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWncWWcSHtWHtHScWW
2 IL_3F1H_0073F1H0.35150A23S RRNAU239G240A241G242U243A244G245*C253G254A255A256A257G258cWWtSHtHHcSHtWHtHScWW
3 IL_2ZJR_0952ZJR0.27380Sarcin-Ricin target in LSU H95; G-bulge (H)X LSU rRNAC2631U2632A2633G2634U2635A2636C2637*G2642G2643A2644C2645C2646G2647cWWncSHtWHtHScWW
4 IL_3DVZ_0013DVZ0.27950ASarcin/Ricin Domain from E. Coli 23 S rRNAC2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWcSHtWHtHScWW
5 IL_1S72_0201S720.145507x6 Sarcin-Ricin; G-bulge (H)0 LSU rRNAC585C586A587G588U589A590A591*U567G568A569C570C571G572cWWncWBcSHtWHtHScWW
6 IL_1S72_0071S720.000007x6 Sarcin-Ricin; G-bulge (H)0 LSU rRNAU210U211A212G213U214A215A216*U224G225A226A227C228G229cWWtSHtHHcSHtWHtHScWW
7 IL_1S72_0491S720.249207x6 Sarcin-Ricin; G-bulge (H)0 LSU rRNAA1367U1368A1369G1370U1371A1372G1373*U2052G2053A2054A2055C2056U2057cWWtSHtHHcSHtWHtHScWW
8 IL_1S72_1031S720.259807x6 Sarcin-Ricin; G-bulge (H)9 5S rRNAG75G76A77G78U79A80C81*G101G102A103A104A105C106cWWtSHtHHcSHtWHtHScWW
9 IL_1S72_0901S720.250500 LSU rRNAA2689U2690A2691G2692U2693A2694C2695*G2700G2701A2702A2703C2704U2705cWWtSHtHHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAGUAC*GGACCG3
UGAGUAG*CGAAAG1
CCAGUAA*UGACCG1
UUAGUAA*UGAACG1
AUAGUAG*UGAACU1
GGAGUAC*GGAAAC1
AUAGUAC*GGAACU1
Non-Watson-Crick part of the motif
SequenceCounts
UAGUA*GACC3
UAGUA*GAAC3
GAGUA*GAAA2
CAGUA*GACC1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_26410.1Only in the child motif
IL_33032.1
Compare
IL_1S72_090, IL_1S72_103, IL_3DVZ_001, IL_1S72_049, IL_1S72_007IL_3F1H_007, IL_1S72_020, IL_2ZJR_095, IL_3F1H_100IL_2XZM_054, IL_2QBG_012, IL_3PYO_007, IL_1NBS_007
IL_58388.1
Compare
IL_1S72_020, IL_2ZJR_095IL_1S72_103, IL_3DVZ_001, IL_3F1H_007, IL_1S72_007, IL_1S72_049, IL_1S72_090, IL_3F1H_100IL_3PYO_090
Annotations
  • 7x6 Sarcin-Ricin; G-bulge (H) (4)
  • (4)
  • Sarcin-Ricin target in LSU H95; G-bulge (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.15 | Avg 0.25 | Max 0.43
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