Motif IL_33032.1 Version IL_33032.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-5 | 5-10 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NBS_007 | 1NBS | 0.1321 | 0 | 7x6 Sarcin-Ricin; G-bulge | B | RNase P class B | U | 165 | G | 166 | A | 167 | G | 168 | U | 169 | A | 170 | U | 171 | * | A | 138 | A | 139 | A | 140 | A | 141 | A | 142 | A | 143 | cWW | ntSH | tHH | cSH | ntWH | tHS | cWW |
| 2 | IL_1S72_007 | 1S72 | 0.0000 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | U | 210 | U | 211 | A | 212 | G | 213 | U | 214 | A | 215 | A | 216 | * | U | 224 | G | 225 | A | 226 | A | 227 | C | 228 | G | 229 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 3 | IL_3DVZ_001 | 3DVZ | 0.1478 | 0 | A | Sarcin/Ricin Domain from E. Coli 23 S rRNA | C | 2652 | U | 2653 | A | 2654 | G | 2655 | U | 2656 | A | 2657 | C | 2658 | * | G | 2663 | G | 2664 | A | 2665 | C | 2666 | C | 2667 | G | 2668 | cWW | cSH | tWH | tHS | cWW | |||
| 4 | IL_1S72_090 | 1S72 | 0.2505 | 0 | 0 | LSU rRNA | A | 2689 | U | 2690 | A | 2691 | G | 2692 | U | 2693 | A | 2694 | C | 2695 | * | G | 2700 | G | 2701 | A | 2702 | A | 2703 | C | 2704 | U | 2705 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 5 | IL_2QBG_012 | 2QBG | 0.2778 | 0 | B | 23S rRNA | C | 239 | C | 240 | A | 241 | G | 242 | U | 243 | A | 244 | G | 245 | * | C | 253 | G | 254 | A | 255 | A | 256 | C | 257 | G | 258 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 6 | IL_1S72_049 | 1S72 | 0.2355 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | A | 1367 | U | 1368 | A | 1369 | G | 1370 | U | 1371 | A | 1372 | G | 1373 | * | U | 2052 | G | 2053 | A | 2054 | A | 2055 | C | 2056 | U | 2057 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 7 | IL_2XZM_054 | 2XZM | 0.2492 | 1 | A | 18S RRNA | G | 1083 | A | 1084 | A | 1085 | G | 1086 | U | 1087 | A | 1088 | G | 1090 | * | U | 1102 | G | 1103 | A | 1104 | A | 1105 | A | 1106 | C | 1107 | cWW | tSH | ntWH | tHS | ncWW | |||
| 8 | IL_3PYO_007 | 3PYO | 0.2598 | 0 | A | 23S ribosomal RNA | U | 239 | G | 240 | A | 241 | G | 242 | U | 243 | A | 244 | G | 245 | * | C | 253 | G | 254 | A | 255 | A | 256 | A | 257 | G | 258 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 9 | IL_1S72_103 | 1S72 | 0.2795 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 9 | 5S rRNA | G | 75 | G | 76 | A | 77 | G | 78 | U | 79 | A | 80 | C | 81 | * | G | 101 | G | 102 | A | 103 | A | 104 | A | 105 | C | 106 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAGUAU*AAAAAA | 1 |
| UUAGUAA*UGAACG | 1 |
| CUAGUAC*GGACCG | 1 |
| AUAGUAC*GGAACU | 1 |
| CCAGUAG*CGAACG | 1 |
| AUAGUAG*UGAACU | 1 |
| GAAGUAUG*UGAAAC | 1 |
| UGAGUAG*CGAAAG | 1 |
| GGAGUAC*GGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUA*GAAC | 3 |
| GAGUA*GAAA | 2 |
| GAGUA*AAAA | 1 |
| UAGUA*GACC | 1 |
| CAGUA*GAAC | 1 |
| AAGUAU*GAAA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_33032.1 | Only in the parent motif |
|---|---|---|---|
| IL_26410.1 Compare | IL_1S72_090, IL_1S72_103, IL_3DVZ_001, IL_1S72_049, IL_1S72_007 | IL_2XZM_054, IL_2QBG_012, IL_3PYO_007, IL_1NBS_007 | IL_3F1H_007, IL_1S72_020, IL_2ZJR_095, IL_3F1H_100 |
Children motifs
| Child motif | Common motif instances | Only in IL_33032.1 | Only in the child motif |
|---|---|---|---|
| IL_49493.1 Compare | IL_1S72_103, IL_3DVZ_001, IL_1S72_007, IL_1S72_049, IL_1S72_090, IL_2XZM_054, IL_2QBG_012, IL_1NBS_007 | IL_3PYO_007 | IL_3UXR_007, IL_3U5H_066, IL_4A1B_064, IL_1S72_020, IL_3UXR_099, IL_2ZJR_095 |
- Annotations
-
- (5)
- 7x6 Sarcin-Ricin; G-bulge (H) (3)
- 7x6 Sarcin-Ricin; G-bulge (1)
- Basepair signature
- Heat map statistics
- Min 0.13 | Avg 0.21 | Max 0.35
Coloring options: