Motif IL_58388.1 Version IL_58388.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 4-5 | 5-10 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_020 | 1S72 | 0.1812 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | C | 585 | C | 586 | A | 587 | G | 588 | U | 589 | A | 590 | A | 591 | * | U | 567 | G | 568 | A | 569 | C | 570 | C | 571 | G | 572 | cWW | ncWB | cSH | tWH | tHS | cWW |
| 2 | IL_2ZJR_095 | 2ZJR | 0.0000 | 0 | Sarcin-Ricin target in LSU H95; G-bulge (H) | X | C | 2631 | U | 2632 | A | 2633 | G | 2634 | U | 2635 | A | 2636 | C | 2637 | * | G | 2642 | G | 2643 | A | 2644 | C | 2645 | C | 2646 | G | 2647 | cWW | ncSH | tWH | tHS | cWW | |
| 3 | IL_3PYO_090 | 3PYO | 0.1752 | 0 | A | C | 2652 | U | 2653 | A | 2654 | G | 2655 | U | 2656 | A | 2657 | C | 2658 | * | G | 2663 | G | 2664 | A | 2665 | C | 2666 | C | 2667 | G | 2668 | cWW | ncWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAGUAC*GGACCG | 2 |
| CCAGUAA*UGACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUA*GACC | 2 |
| CAGUA*GACC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_58388.1 | Only in the parent motif |
|---|---|---|---|
| IL_26410.1 Compare | IL_1S72_020, IL_2ZJR_095 | IL_3PYO_090 | IL_1S72_103, IL_3DVZ_001, IL_3F1H_007, IL_1S72_007, IL_1S72_049, IL_1S72_090, IL_3F1H_100 |
Children motifs
| Child motif | Common motif instances | Only in IL_58388.1 | Only in the child motif |
|---|---|---|---|
| IL_49493.1 Compare | IL_1S72_020, IL_2ZJR_095 | IL_3PYO_090 | IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_3UXR_007, IL_1S72_007, IL_1S72_049, IL_1S72_090, IL_2XZM_054, IL_3UXR_099, IL_4A1B_064, IL_2QBG_012, IL_1NBS_007 |
- Annotations
-
- 7x6 Sarcin-Ricin; G-bulge (H) (1)
- Sarcin-Ricin target in LSU H95; G-bulge (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.18 | Avg 0.14 | Max 0.26
Coloring options: