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Motif IL_37431.1 Version IL_37431.1 of this group appears in releases 0.1 to 0.1

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-53-4
1 IL_3F1H_1133F1H0.84490B5S RRNAU80G81G82*C94U95G96cWWcWW
2 IL_1L9A_0071L9A0.66610Isolated cWH basepairBsignal recognition particle RNA S domainG187G188C189*G210U211C212cWWcWW
3 IL_3F1H_0803F1H0.55640A23S RRNAU2232U2233G2234*C2085U2086G2087cWWcWwcWW
4 IL_2ZJR_0792ZJR0.52010X LSU rRNAU2211U2212G2213*C2068U2069G2070ncWWcWwcWW
5 IL_2ZJR_0302ZJR0.67150Isolated non-canonical cWW pair (H)X LSU rRNAG963A964G965*U974C975C976cWWcWWcWW
6 IL_3F1H_0333F1H0.64230A23S RRNAG952A953G954*U963C964C965cWWcWWcWW
7 IL_1ZEV_0021ZEV0.65880A+BRNA (18-mer)C4||AU5||AG6||A*C13||AU14||AG15||AcWWcWW
8 IL_1ZEV_0051ZEV0.61250B+ARNA (18-mer)C4||AU5||AG6||A*C13||AU14||AG15||AcWWncWwcWW
9 IL_1ZH5_0011ZH50.56360Isolated non-canonical cWW pairD+CRNA (9-mer)C3U4G5*C3U4G5cWWncWwcWW
10 IL_1ZEV_0061ZEV0.59710A+BRNA (18-mer)C16||AU17||AG18||A*C1||AU2||AG3||AcWWncWwcWW
11 IL_1ZEV_0031ZEV0.63870A+BRNA (18-mer)C7||AU8||AG9||A*C10||AU11||AG12||AcWWncWwcWW
12 IL_1ZEV_0041ZEV0.60670A+BRNA (18-mer)C10||AU11||AG12||A*C7||AU8||AG9||AcWWncWwcWW
13 IL_3F1H_0813F1H0.65530A23S RRNAC2179U2180G2181*C2108U2109G2110cWWncWwcWW
14 IL_3F1H_0143F1H0.60730A23S RRNAC564C565U566*A575U576G577cWWcWWcWW
15 IL_2ZJR_0102ZJR0.60210X LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
16 IL_2ZJR_1072ZJR0.69060Isolated non-canonical cWW (H)Y 5S rRNAU82C83G84*C97C98G99cWWcBWcWW
17 IL_3GLP_0013GLP0.70700A+BRNA (8-mer)C2U3G4*C5||AU6G7cWWcWW
18 IL_1RPU_0011RPU0.64950Isolated non-canonical cWW pairD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
19 IL_3GLP_0033GLP0.66410D+CRNA (8-mer)C5U6G7*C2U3G4cWW
20 IL_3GLP_0023GLP0.63940A+BRNA (8-mer)C5U6G7*C2||AU3||AG4ncWwcWW
21 IL_3GLP_0043GLP0.60110D+CRNA (8-mer)C2U3G4*C5U6||AG7cWW
22 IL_1ZEV_0011ZEV0.55160A+BRNA (18-mer)C1||AU2||AG3||A*C16||AU17||AG18||AncWWcWWcWwcWW
23 IL_2ZKO_0012ZKO0.58610Isolated non-canonical cWW pairC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
24 IL_1FJG_0061FJG0.67230Isolated non-canonical cWW pair (H)A SSU rRNAC67G68G69*C99A101G102cWWcWWcWW
25 IL_3FO4_0013FO40.70110AGuanine riboswitch C74U mutantU25C26G27*C43A44A45cWWcWWacWW
26 IL_1S72_0241S720.78410Isolated non-canonical cWW pair (H)0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
27 IL_2ZJR_0422ZJR0.81690Isolated non-canonical cWW (H)X LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
28 IL_3F1H_0543F1H0.74381A23S RRNAU1433A1434G1435*C1557A1558G1560cWWcWW
29 IL_2ZJR_0532ZJR0.66601X LSU rRNAU1447A1448C1449*G1573A1574G1576cWWncwWcWW
30 IL_2ZJR_0132ZJR0.67860X LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
31 IL_3F1H_0163F1H0.70730A23S RRNAC806U807G808*C672C673G674cWWcWWcWW
32 IL_157D_002157D0.69850A+BRNA (12-mer)U8A9G10*C15G16A17cWWcWWcWW
33 IL_2Q1R_0012Q1R0.68400ARNA (12-mer)C1003G1004A1005*U1008||||2_755A1009||||2_755G1010||||2_755cWWcWWcWW
34 IL_2Q1R_0022Q1R0.68400ARNA (12-mer)C1003||||2_755G1004||||2_755A1005||||2_755*U1008A1009G1010cWWcWWcWW
35 IL_157D_001157D0.64050A+BRNA (12-mer)C3G4A5*U20A21G22cWWcWWcWW
36 IL_3CUN_0023CUN0.62720CRNA (92-MER)C87A88G89*U57G58G59cWWcWWncWW
37 IL_3DIR_0063DIR0.63180ARNA (174-MER)C137A138C139*G115G116G117cWWcWWcWW
38 IL_3D0U_0063D0U0.59910Isolated non-canonical cWW pairALysine Riboswitch RNAC134A135C136*G112G113G114cWWcWWcWW
39 IL_5MSF_0015MSF0.59111Isolated non-canonical cWW pairRRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
40 IL_5MSF_0025MSF0.64991SRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
41 IL_1FJG_0101FJG0.56500Isolated non-canonical cWW pair (H)A SSU rRNAC186C187C188*G190|||KU190|||LG191cWWcWWcWW
42 IL_1KFO_0031KFO0.60000Isolated non-canonical cWW pairARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
43 IL_1KFO_0021KFO0.60000Isolated non-canonical cWW pairARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
44 IL_1FJG_0561FJG0.60420A SSU rRNAG1405U1406C1407*G1494U1495C1496cWWncWwcWW
45 IL_1MWL_0011MWL0.58210A+BRNA (22-mer)G4U5C6*G40U41C42cWWncWwcWW
46 IL_1MWL_0041MWL0.55300B+ARNA (22-mer)G26U27C28*G18||AU19C20cWWncWwcWW
47 IL_1FJG_0581FJG0.61530Isolated non-canonical cWW pair (H)A SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
48 IL_2ZJR_0192ZJR0.57490X LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
49 IL_3HHN_0043HHN0.63500Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWcWWcWW
50 IL_3HHN_0023HHN0.61340CClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWncWWcWW
51 IL_1FJG_0621FJG0.64260A SSU rRNAG1464C1465C1466*G1435U1436C1437cWWcWWcWW
52 IL_3E5C_0013E5C0.39103Isolated non-canonical cWW pairASMK box (SAM-III) RiboswitchG12A13U14*A27G28C32cWWcWWcWW
53 IL_1NLC_0021NLC0.56751A+BHIV-1 DIS(MAL) genomic RNAC15A16C17*G7||AG9||AG10cWWcWWcWW
54 IL_1XJR_0031XJR0.55651Isolated non-canonical cWW pairAs2m RNAC16A17C18*G32G34G35cWWcWWcWW
55 IL_1NLC_0011NLC0.60211B+AHIV-1 DIS(MAL) genomic RNAC15A16C17*G7G9G10cWWcWWcWW
56 IL_2ZJR_0252ZJR0.53680Isolated non-canonical cWW pair (H)X LSU rRNAC864A865U866*A936C937G938cWWcWWcWW
57 IL_1U9S_0071U9S0.46570Isolated non-canonical cWW pairARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
58 IL_1S72_0471S720.473300 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
59 IL_405D_002405D0.49410A+BRNA (16-mer)A10A11U12*A21C22U23cWWcWWcWW
60 IL_405D_001405D0.46500B+ARNA (16-mer)A26A27U28*A5C6U7cWWcWWcWW
61 IL_1Z7F_0021Z7F0.46900Isolated non-canonical cWW pairARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
62 IL_1Z7F_0011Z7F0.46900Isolated non-canonical cWW pairARNA (16-mer)A10||||6_765A11||||6_765U12||||6_765*A5C6U7cWWcWWcWW
63 IL_3MEI_0023MEI0.47780Isolated non-canonical cWW pairA+BRNA (23-mer)G8C9C10*G13C14C15cWWncBWcWW
64 IL_1YZ9_0021YZ90.47940Isolated non-canonical cWW pairE+FRNA (11-mer)A4C5U6*A15C16U17cWWncBWcWW
65 IL_1YZ9_0011YZ90.45990Isolated non-canonical cWW pairD+CRNA (11-mer)A15C16U17*A4C5U6cWWncBWcWW
66 IL_3BNQ_0073BNQ0.45260D+CA site of human mitochondrial ribosome, B chainG17U18C19*G5U6C7cWWcWwcWW
67 IL_2O3V_0042O3V0.50520Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
68 IL_3BNQ_0013BNQ0.53810B+AA site of human mitochondrial ribosome, A chainG19U20C21*G5U6C7cWWncWwcWW
69 IL_2O3V_0012O3V0.48550Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
70 IL_2O3X_0042O3X0.50870Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
71 IL_1ZX7_0081ZX70.48730H+GRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
72 IL_1T0E_0021T0E0.52530Isolated non-canonical cWW pairC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
73 IL_1ZX7_0041ZX70.54690Isolated non-canonical cWW pairD+CRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
74 IL_1ZX7_0061ZX70.55990Isolated non-canonical cWW pairF+ERNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
75 IL_1T0D_0021T0D0.51620B+ARNA (16-mer)G24U25C26*G10U11C12cWWcWwcWW
76 IL_2OE5_0012OE50.46210Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
77 IL_1T0D_0041T0D0.48920D+CRNA (16-mer)G24U25C26*G10U11C12cWWcWwcWW
78 IL_2O3Y_0012O3Y0.49340Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
79 IL_2FQN_0012FQN0.49950B+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
80 IL_2FQN_0042FQN0.52100A+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
81 IL_2O3Y_0042O3Y0.47900Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
82 IL_3BNQ_0123BNQ0.46510D+CA site of human mitochondrial ribosome, B chainG3U4C5*G19U20C21cWWcWwcWW
83 IL_3BNQ_0063BNQ0.45600B+AA site of human mitochondrial ribosome, A chainG5U6C7*G19U20C21cWWcWwcWW
84 IL_1FJG_0441FJG0.43650A SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
85 IL_1ZX7_0021ZX70.49940B+ARNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
86 IL_3BNP_0013BNP0.48450B+AA site of human mitochondrial ribosome, B chainG17U18C19*G4U5C6cWWcWwcWW
87 IL_3BNP_0043BNP0.44390A+BA site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chainG18U19C20*G3U4C5cWWcWwcWW
88 IL_1O9M_0041O9M0.47440A+BEUBACTERIAL A-SITEG1494U1495C1496*G1405U1406C1407cWWcWwcWW
89 IL_3BNL_0013BNL0.47780B+AA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
90 IL_3BNL_0043BNL0.47450A+BA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
91 IL_3BNT_0063BNT0.46340Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
92 IL_3BNT_0013BNT0.46340Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
93 IL_1MZP_0011MZP0.43360Isolated non-canonical cWW pairBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
94 IL_3HL2_0023HL20.43580ESelenocysteine transfer RNAC65||AU66||AU67||A|A*A5||A|CU6||AG7||AncWWcWWcWwcWW
95 IL_1S72_0951S720.00001Isolated non-canonical cWW with bulges (H)0 LSU rRNAG2855A2856C2857*G2900C2901C2903cWWncWWcWW
96 IL_2ZJR_1002ZJR0.25831X LSU rRNAG2813G2814C2815*G2852U2853C2855cWWcWWcWW
97 IL_2ZJR_0902ZJR0.37842Isolated non-canonical cWW with bulges (H)X LSU rRNAC2489U2490C2491*G2553C2554G2557cWWncWWcWW
98 IL_3F1H_0943F1H0.37512A23S RRNAC2510U2511C2512*G2574C2575G2578cWWncWWcWW
99 IL_1S72_0851S720.43612Isolated non-canonical cWW pair (H)0 LSU rRNAU2545U2546C2547*G2609U2610G2613cWWcWwcWW
100 IL_3F1H_0433F1H0.48221A23S RRNAC1196G1197U1198*A1247U1249G1250cWWcWScWW
101 IL_2QEK_0012QEK0.51031B+AHIV-1 subtype F DIS genomic RNAC15A16C17*G7A8G10cWWcWwcWW
102 IL_3F1H_0393F1H0.63831A23S RRNAC1121G1122C1123*G1031A1032G1034cWWncWWcWW
103 IL_2ZJR_0362ZJR0.62971Isolated non-canonical cWW pair (H)X LSU rRNAC1132G1133C1134*G1042A1043G1045cWWcWWcWW
104 IL_2ZJR_0292ZJR0.71610Isolated near basepair (H)X LSU rRNAU917A918U919*A883C884A885cWWcWW
105 IL_3NJ7_0053NJ70.62740E+FRNA (10-mer)C3A4G5*C6A7G8cWWcWW
106 IL_3NJ7_0023NJ70.62640B+ARNA (10-mer)C3A4G5*C6A7G8cWWcWW
107 IL_3NJ6_0013NJ60.56830ARNA (10-mer)C3A4G5*C6||||6_555A7||||6_555G8||||6_555cWWcWW
108 IL_3NJ6_0023NJ60.56830ARNA (10-mer)C3||||6_555A4||||6_555G5||||6_555*C6A7G8cWWcWW
109 IL_3NJ7_0043NJ70.71890Isolated near basepairD+CRNA (10-mer)C3A4G5*C6A7G8cWWcWW
110 IL_3NJ7_0033NJ70.71940Isolated near basepairC+DRNA (10-mer)C3A4G5*C6A7G8cWWcWW
111 IL_3NJ7_0013NJ70.72520A+BRNA (10-mer)C3A4G5*C6A7G8cWWcWW
112 IL_3NJ7_0063NJ70.72350F+ERNA (10-mer)C3A4G5*C6A7G8cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC30
CUG*CUG12
CAG*CAG8
AAU*ACU4
CGA*UAG3
CAC*GAGG3
UUG*CUG2
GAG*UCC2
CUG*CCG2
CAC*GGG2
CAC*GGAG2
GAG*CCU2
AAC*GGU2
ACU*ACU2
CUU*AUG2
CUC*GCGAG2
CGC*GAUG2
UGG*CUG1
GGC*GUC1
CCU*AUG1
AUG*CCU1
UCG*CCG1
UCA*UCA1
UUA*UUA1
CGG*CAG1
UCG*CAA1
CCG*CCG1
UAG*CAGG1
UAC*GACG1
CUA*UCG1
UAG*CGA1
CAG*UGG1
CCC*GUG1
CAU*GGG1
GUC*GCC1
GCC*GUC1
GAU*AGAUGC1
CAU*ACG1
CAC*GCG1
CUC*GUG1
GCC*GCC1
GAC*GCAC1
GGC*GUGC1
UUC*GUGAG1
CGU*AGUG1
CAC*GAAG1
UAU*ACA1
Non-Watson-Crick part of the motif
SequenceCounts
U*U48
A*C11
A*A8
A*G7
C*C6
U*C5
G*A4
A*AG4
C*U3
G*U2
A*GA2
U*CGA2
G*AU2
C*A1
A*AC1
A*GAUG1
A*CA1
G*UG1
U*UGA1
G*GU1
A*AA1

Release history

Release0.1
Date2011-12-08
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_37431.1Only in the child motif
IL_90629.1
Compare		IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_3F1H_094, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_2ZJR_042, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_1YZ9_001, IL_1FJG_006, IL_1YZ9_002, IL_2OE5_001, IL_3E5C_001, IL_2Q1R_002, IL_1MWL_001, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_3MEI_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002IL_3F1H_085, IL_3LOA_003, IL_2ZI0_001, IL_3F1H_062, IL_3F1H_024, IL_3BNL_002, IL_1O9M_003
Annotations
  • (68)
  • Isolated non-canonical cWW pair (28)
  • Isolated non-canonical cWW pair (H) (8)
  • Isolated non-canonical cWW with bulges (H) (2)
  • Isolated non-canonical cWW (H) (2)
  • Isolated near basepair (2)
  • Isolated cWH basepair (1)
  • Isolated near basepair (H) (1)
    • Basepair signature
    Heat map statistics
    Min 0.00 | Avg 0.41 | Max 1.00
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