Motif IL_37497.7 Version IL_37497.7 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	3-4
1	IL_4V9F_032	4V9F	1.0861	Single bulged A	0	LSU rRNA	U	942	A	943	G	944	*	C	1023	G	1024	cWW	cWW
2	IL_7KGA_005	7KGA	0.9472	Single bulged A	B	Flavivirus DB element	U	39	A	40	G	41	*	C	14	A	15	cWW	cWW
3	IL_5TBW_098	5TBW	1.1870	Single bulged A	1	LSU rRNA	C	2625	A	2626	C	2627	*	G	2614	G	2615	cWW	cWW
4	IL_4V9F_079	4V9F	1.2232	Single bulged A	0	LSU rRNA	U	2290	A	2291	C	2292	*	G	2279	A	2280	cWW	cWW
5	IL_7VTI_001	7VTI	1.1450	Single bulged A	B	crRNA	U	31	A	32	C	33	*	G	4	G	5	cWW	cWW
6	IL_4PHY_004	4PHY	1.1400	Single bulged A	A+B	RNA (26-MER) + RNA (20-mer)	C	20	A	21	C	22	*	G	30	G	31	ncWW	cWW
7	IL_8UO6_001	8UO6	1.0340	Single bulged A	A	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	G	60	A	61	C	62	*	G	42	C	43	cWW	cWW
8	IL_4V9F_002	4V9F	1.0768	Single bulged A	0	LSU rRNA	G	448	A	449	C	450	*	G	33	C	34	cWW	cWW
9	IL_4V88_399	4V88	0.9985	Single bulged A	A6	SSU rRNA	A	265	A	266	U	267	*	A	288	U	289	cWW	cWW
10	IL_6XH2_002	6XH2	0.9408	Single bulged A	D	TRANS-ACTIVATION RESPONSE ELEMENT	G	34	A	35	G	36	*	C	29	C	30	cWW	cWW
11	IL_8VTW_032	8VTW	0.9891	Single bulged A	1A	LSU rRNA	U	895	A	896	C	897	*	G	880	G	881	cWW	cWW
12	IL_5WWT_001	5WWT	1.0248	Single bulged A	C	tRNA	G	37	A	38	U	39	*	A	31	C	32	cWW	cWW
13	IL_7MKY_001	7MKY	1.0245	Single bulged A	A	RNA (66-MER)	G	49	A	50	U	51	*	A	35	C	36	cWW	cWW
14	IL_8VMB_002	8VMB	1.0234	Single bulged A	R	Enterovirus 5' cloverleaf cis-acting replication element	U	46	A	47	G	48	*	C	75	G	76	cWW	cWW
15	IL_5FJC_001	5FJC	1.0991	Single bulged A	A	SAM-I riboswitch	G	13	A	14\|\|A	G	15	*	C	40	C	41	cWW	cWW
16	IL_7DLZ_001	7DLZ	1.0747	Single bulged A	X	RNA (45-MER)	U	6	A	7	C	8	*	G	39	G	40	cWW	cWW
17	IL_8VMA_003	8VMA	1.0433	Single bulged A	C	Enterovirus 5' cloverleaf cis-acting replication element	U	46	A	47	G	48	*	C	78	G	79	cWW	cWW
18	IL_5J7L_302	5J7L	1.0359	Single bulged A	DA	LSU rRNA	C	1489	A	1490	G	1491	*	C	1499	G	1500	cWW	cWW
19	IL_2OZB_001	2OZB	1.0542	Single bulged A	C	RNA comprising the 5' Stem-Loop RNA of U4snRNA	U	24	A	25	G	26	*	C	47	G	48	cWW	cWW
20	IL_8VTW_061	8VTW	0.8591	Single bulged A	1A	LSU rRNA	U	1489	A	1490	G	1491	*	C	1499	G	1500	cWW	cWW
21	IL_4V9F_098	4V9F	0.8372	Single bulged A	0	LSU rRNA	C	2895	A	2896	C	2897	*	G	2860	G	2861	cWW	cWW
22	IL_8VTW_047	8VTW	0.7654	Single bulged A	1A	LSU rRNA	G	1219	A	1220	C	1221	*	G	1229	C	1230	cWW	cWW
23	IL_5TBW_045	5TBW	0.7072	Single bulged A	1	LSU rRNA	U	1074	A	1075	C	1076	*	G	1083	A	1084	cWW	cWW
24	IL_4V88_441	4V88	0.7078	Single bulged A	A6	SSU rRNA	U	1630	A	1631	C	1632	*	G	1146	A	1147	cWW	cWW
25	IL_8C3A_447	8C3A	0.7199	Single bulged A	CM	SSU rRNA	U	1617	A	1618	C	1619	*	G	1131	A	1132	cWW	cWW
26	IL_5J7L_039	5J7L	0.7366	Single bulged A	AA	SSU rRNA	U	1393	A	1394	C	1395	*	G	922	A	923	cWW	cWW
27	IL_4LFB_035	4LFB	0.7399	Single bulged A	A	SSU rRNA	U	1393	A	1394	C	1395	*	G	922	A	923	cWW	cWW
28	IL_6CZR_147	6CZR	0.7633	Single bulged A	1a	SSU rRNA	U	1376	A	1377	C	1378	*	G	900	A	901	cWW	cWW
29	IL_8VM9_003	8VM9	0.6922	Single bulged A	R	Enterovirus 5' cloverleaf cis-acting replication element	U	43	A	44	G	45	*	C	75	G	76	cWW	cWW
30	IL_8C3A_122	8C3A	0.7419	Single bulged A	1	LSU rRNA	C	2942	A	2943	G	2944	*	C	2932	G	2933	cWW	cWW
31	IL_5TBW_113	5TBW	0.8219	Single bulged A	1	LSU rRNA	C	2970	A	2971	G	2972	*	C	2960	G	2961	cWW	cWW
32	IL_5J7L_344	5J7L	1.0576	Single bulged A	DA	LSU rRNA	C	2601	A	2602	G	2603	*	C	2591	G	2592	cWW	cWW
33	IL_4AOB_001	4AOB	0.9170	Single bulged A	A	SAM-I riboswitch	G	13	A	14	G	15	*	C	40	C	41	cWW	cWW
34	IL_5TBW_024	5TBW	1.0453	Single bulged A	1	LSU rRNA	G	779	A	780	G	781	*	C	752	C	753	cWW	cWW
35	IL_8C3A_026	8C3A	1.0052	Single bulged A	1	LSU rRNA	G	775	A	776	G	777	*	C	748	C	749	cWW	cWW
36	IL_1JZV_002	1JZV	0.9493	Single bulged A	B+A	RNA (9-mer)	U	12	A	13	C	14	*	G	4	A	5	cWW	cWW
37	IL_4P43_003	4P43	0.8329	Single bulged A	A+B	RNA (23-mer)	A	17	A	18	G	19	*	C	30	U	31	cWW	cWW
38	IL_4P43_002	4P43	0.8041	Single bulged A	B+A	RNA (23-mer)	A	40	A	41	G	42	*	C	7	U	8	cWW	cWW
39	IL_5AOX_002	5AOX	0.8789	Single bulged A	C	ALU JO CONSENSUS RNA	G	56	A	57	G	58	*	C	108	C	109	cWW	cWW
40	IL_1DUQ_002	1DUQ	0.8891	Single bulged A	B+A	THE REV BINDING ELEMENT	G	120	A	121	C	122	*	G	108	C	109	cWW	cWW
41	IL_1CSL_002	1CSL	0.9132	Single bulged A	B+A	RNA (15-mer)	G	67	A	68	C	69	*	G	50	C	51	cWW	cWW
42	IL_1I9X_002	1I9X	0.9636	Single bulged A	B+A	RNA (13-mer)	U	4	A	5	A	6	*	U	9	A	10	cWW	cWW
43	IL_8C3A_020	8C3A	0.9730	Single bulged A	1	LSU rRNA	C	575	A	576	G	577	*	C	508	G	509	cWW	cWW
44	IL_5TBW_018	5TBW	1.0171	Single bulged A	1	LSU rRNA	C	577	A	578	G	579	*	U	512	G	513	cWW	cWW
45	IL_4P3U_011	4P3U	0.9603	Single bulged A	C+D	RNA (23-mer)	A	17	A	18	G	19	*	C	30	U	31	cWW	cWW
46	IL_4P3U_008	4P3U	0.9908	Single bulged A	D+C	RNA (23-mer)	A	40	A	41	G	42	*	C	7	U	8	cWW	cWW
47	IL_4P3U_005	4P3U	0.9434	Single bulged A	A+B	RNA (23-mer)	A	17	A	18	G	19	*	C	30	U	31	cWW	cWW
48	IL_2C4Q_001	2C4Q	0.8807	Single bulged A	R	RNA (19-mer)	G	5\|\|\|\|P_1	A	6\|\|\|\|P_1	G	7\|\|\|\|P_1	*	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW	cWW
49	IL_6MSF_001	6MSF	1.0094	Single bulged A	R	RNA (14-mer)	C	2\|\|\|\|P_1	A	3\|\|\|\|P_1	C	4\|\|\|\|P_1	*	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	cWW	cWW
50	IL_4R4V_003	4R4V	0.9779	Single bulged A	A	VS ribozyme RNA	C	651	A	652	G	653	*	C	766	G	767	cWW	cWW
51	IL_2VPL_002	2VPL	0.9926	Single bulged A	B	FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE	G	28	A	29	A	30	*	U	16	C	17	cWW	cWW
52	IL_1GID_009	1GID	0.9768	Single bulged A	B	P4-P6 RNA RIBOZYME DOMAIN	C	209	A	210	C	211	*	G	110	G	111	cWW	cWW
53	IL_4V88_409	4V88	1.0464	Single bulged A	A6	SSU rRNA	A	505	A	506	U	507	*	A	481	U	482	cWW	cWW
54	IL_1U9S_001	1U9S	1.1364	Single bulged A	A	RIBONUCLEASE P	G	107	A	108	C	109	*	G	95	C	96	cWW	cWW
55	IL_1I9X_001	1I9X	1.0440	Single bulged A	A+B	RNA (13-mer)	U	4	A	5	A	6	*	U	9	A	10	cWW	cWW
56	IL_1NBS_005	1NBS	1.0901	Single bulged A	B	RNase P class B	G	129	A	130	C	131	*	G	113	C	114	cWW	cWW
57	IL_7A0S_002	7A0S	1.1848	Single bulged A	X	LSU rRNA	G	454	A	455	C	456	*	G	36	C	37	cWW	cWW
58	IL_4WF9_002	4WF9	1.1268	Single bulged A	X	LSU rRNA	G	488	A	489	C	490	*	G	36	C	37	cWW	cWW
59	IL_5J7L_246	5J7L	1.0934	Single bulged A	DA	LSU rRNA	G	442	A	443	C	444	*	G	36	C	37	cWW	cWW
60	IL_5TBW_013	5TBW	1.0258	Single bulged A	1+4	LSU rRNA + 5.8S rRNA	G	337	A	338	C	339	*	G	25	U	26	cWW	cWW
61	IL_8C3A_014	8C3A	1.0006	Single bulged A	1+4	LSU rRNA + 5.8S rRNA	G	337	A	338	C	339	*	G	25	U	26	cWW	cWW
62	IL_8C3A_087	8C3A	0.9896	Single bulged A	1	LSU rRNA	G	2301	A	2302	G	2303	*	C	2106	U	2107	cWW	cWW
63	IL_5TBW_082	5TBW	0.9995	Single bulged A	1	LSU rRNA	G	2323	A	2324	G	2325	*	C	2128	U	2129	cWW	cWW
64	IL_8VTW_068	8VTW	0.9619	Single bulged A	1A	LSU rRNA	G	1980	A	1981	C	1982	*	G	1770	C	1771	cWW	cWW
65	IL_4V9F_064	4V9F	0.9639	Single bulged A	0	LSU rRNA	C	2021	A	2022	G	2023	*	C	1826	G	1827	cWW	cWW
66	IL_5J7L_312	5J7L	1.0112	Single bulged A	DA	LSU rRNA	G	1980	A	1981	U	1982	*	G	1770	C	1771	cWW	cWW
67	IL_7A0S_064	7A0S	1.0052	Single bulged A	X	LSU rRNA	G	1963	A	1964	U	1965	*	G	1761	C	1762	cWW	cWW
68	IL_4WF9_068	4WF9	1.0157	Single bulged A	X	LSU rRNA	G	2007	A	2008	U	2009	*	G	1797	C	1798	cWW	cWW
69	IL_8C3A_143	8C3A	1.1387	Single bulged A	3	5S rRNA	A	63	A	64	G	65	*	C	15	U	16	cWW	cWW
70	IL_5TBW_372	5TBW	1.1397	Single bulged A	AS	5S rRNA	A	63	A	64	G	65	*	C	15	U	16	cWW	cWW
71	IL_7A0S_012	7A0S	0.9758	Single bulged A	X	LSU rRNA	G	600	A	601	C	602	*	G	678	C	679	cWW	cWW
72	IL_3MJA_001	3MJA	1.0515	Single bulged A	B	Domain 3 of the cricket paralysis virus intergenic region IRES RNA	C	6181	A	6182	G	6183	*	C	6194	G	6195	cWW	cWW
73	IL_8C3A_019	8C3A	1.1619	Single bulged A	1	LSU rRNA	G	505	A	506	G	507	*	C	578	C	579	cWW	cWW
74	IL_4LGT_002	4LGT	1.2838	Single bulged A	E	stem-loop of 23S rRNA	C	2601	A	2602	G	2603	*	C	2591	G	2592	cWW	cWW
75	IL_8X5V_002	8X5V	1.2494	Single bulged A	B	RNA (110-mer)	G	61	A	62	C	63	*	G	55	C	56	cWW	cWW
76	IL_4P3U_002	4P3U	1.0499	Single bulged A	B+A	RNA (23-mer)	A	40	A	41	G	42	*	C	7	U	8	ncWW	cWW
77	IL_3V7E_001	3V7E	1.0707	Single bulged A	C	SAM-I riboswitch	G	13	A	14	G	15	*	C	40	C	41	cWW	cWW
78	IL_8C3A_031	8C3A	1.0379	Single bulged A	1	LSU rRNA	A	891	A	892	U	893	*	A	824	U	825	cWW	cWW
79	IL_7A0S_016	7A0S	1.0474	Single bulged A	X	LSU rRNA	G	776	A	777	G	778	*	C	710	C	711	cWW	cWW
80	IL_4V9F_025	4V9F	1.0809	Single bulged A	0	LSU rRNA	G	856	A	857	U	858	*	A	788	C	789	cWW	cWW
81	IL_5J7L_261	5J7L	1.0850	Single bulged A	DA	LSU rRNA	G	763	A	764	C	765	*	G	697	C	698	cWW	cWW
82	IL_8VTW_018	8VTW	1.0436	Single bulged A	1A	LSU rRNA	G	763	A	764	G	765	*	C	697	C	698	cWW	cWW
83	IL_4WF9_022	4WF9	1.0757	Single bulged A	X	LSU rRNA	G	808	A	809	A	810	*	U	742	C	743	cWW	cWW
84	IL_8VTW_058	8VTW	1.1191	Single bulged A	1A	LSU rRNA	G	1459	A	1460	G	1461	*	C	1450\|\|\|A	C	1451	cWW	cWW
85	IL_7KGA_002	7KGA	0.7738	Single bulged A	A	Flavivirus DB element	U	39	A	40	G	41	*	C	14	A	15	cWW	cWW
86	IL_8XZL_003	8XZL	0.9465	Single bulged A	A	THF-II riboswitch (folE RNA)	G	32	A	33	C	34	*	G	27	C	28	cWW	cWW
87	IL_5J7L_049	5J7L	0.9928	Single bulged A	AA	SSU rRNA	C	1195	A	1196	A	1197	*	U	1060	G	1061	cWW	cWW
88	IL_3OXE_001	3OXE	1.1013	Single bulged A	A	domain II of glycine riboswitch	G	12	A	13	A	14	*	U	27	C	28	cWW	cWW
89	IL_8C3A_062	8C3A	1.0874	Single bulged A	1	LSU rRNA	C	1381	A	1382	G	1383	*	C	1416	G	1417	cWW	cWW
90	IL_5TBW_058	5TBW	1.0927	Single bulged A	1	LSU rRNA	C	1385	A	1386	G	1387	*	C	1420	G	1421	cWW	cWW
91	IL_1MFQ_005	1MFQ	0.9391	Single bulged A	A	SRP RNA	G	175	A	176	G	177	*	C	220	C	221	cWW	cWW
92	IL_6CYT_001	6CYT	0.9564	Single bulged A	N	RNA (17-mer)	G	34	A	35	G	36	*	C	29	C	30	cWW	cWW
93	IL_7JJU_004	7JJU	0.8543	Single bulged A	B	PLRV_xrRNA	C	31	A	32	U	33	*	A	12	G	13	cWW	cWW
94	IL_7JJU_002	7JJU	0.8645	Single bulged A	A	PLRV_xrRNA	C	31	A	32	U	33	*	A	12	G	13	cWW	cWW
95	IL_6D3P_004	6D3P	1.0328	Single bulged A	A	RNA (45-MER)	G	27	A	28	G	29	*	C	12	C	13	cWW	cWW
96	IL_8UIW_001	8UIW	0.9838	Single bulged A	N	azaaromatic riboswitch aptamer (yjdF RNA)	G	44	A	45	U	46	*	A	63	C	64	cWW	cWW
97	IL_5TBW_060	5TBW	1.0794	Single bulged A	1	LSU rRNA	U	1398	A	1399	G	1400	*	C	1411	G	1412	cWW	cWW
98	IL_4R4V_004	4R4V	0.8633	Single bulged A	A	VS ribozyme RNA	U	712	A	713	G	714	*	C	660	A	661	cWW	cWW
99	IL_6WPI_001	6WPI	0.8408	Single bulged A	B	RNA (47-MER)	G	11	A	12	A	13	*	U	41	C	42	cWW	cWW
100	IL_2QUX_002	2QUX	0.8172	Single bulged A	F	RNA (25-MER)	C	5	A	6	G	7	*	C	20	G	21	cWW	cWW
101	IL_4WF9_006	4WF9	0.8801	Single bulged A	X	LSU rRNA	C	175	A	176	G	177	*	C	152	G	153	cWW	cWW
102	IL_1U63_004	1U63	0.8695	Single bulged A	D	49 NT FRAGMENT OF MRNA FOR L1	G	28	A	29	A	30	*	U	16	C	17	cWW	cWW
103	IL_8C3A_131	8C3A	0.7586	Single bulged A	1	LSU rRNA	G	3147	A	3148	U	3149	*	A	3175	C	3176	cWW	cWW
104	IL_5TBW_123	5TBW	0.7253	Single bulged A	1	LSU rRNA	G	3177	A	3178	U	3179	*	A	3210	C	3211	cWW	cWW
105	IL_4V88_452	4V88	0.7919	Single bulged A	A6	SSU rRNA	C	1426	A	1427	G	1428	*	C	1280	G	1281	cWW	cWW
106	IL_8C3A_458	8C3A	0.7596	Single bulged A	CM	SSU rRNA	C	1412	A	1413	G	1414	*	C	1265	G	1266	cWW	cWW
107	IL_8C3A_418	8C3A	0.6290	Single bulged A	CM	SSU rRNA	A	503	A	504	U	505	*	A	479	U	480	cWW	cWW
108	IL_4V9F_090	4V9F	0.0000	Single bulged A	0	LSU rRNA	C	2636	A	2637	G	2638	*	C	2626	G	2627	cWW	cWW
109	IL_5CNR_002	5CNR	0.6896	Single bulged A	B+A	RNA (11-mer)	G	38	A	39	G	40	*	C	12	C	13	cWW	cWW
110	IL_4P97_002	4P97	0.7118	Single bulged A	B+A	RNA (11-mer)	G	38	A	39	G	40	*	C	12	C	13	cWW	cWW
111	IL_4PHY_002	4PHY	0.6764	Single bulged A	B+A	RNA (20-mer)	G	38	A	39	G	40	*	C	12	C	13	cWW	cWW
112	IL_6CZR_114	6CZR	0.9241	Single bulged A	1a	SSU rRNA	G	392	A	393	C	394	*	G	45	U	46	cWW	cWW
113	IL_4LFB_002	4LFB	0.9262	Single bulged A	A	SSU rRNA	G	396	A	397	C	398	*	G	44	U	45	cWW	cWW
114	IL_5J7L_002	5J7L	0.8603	Single bulged A	AA	SSU rRNA	C	396	A	397	U	398	*	A	44	G	45	cWW	cWW
115	IL_5J7L_355	5J7L	0.8768	Major groove intercalation	DB	5S rRNA	U	65	A	66	G	67	*	C	17	G	18	cWW	cWW
116	IL_7JNH_003	7JNH	0.8841	Major groove intercalation	B	Core double ENE RNA (Xtal construct) from Oryza sativa transposon	U	55	A	56	C	57	*	G	35	G	36	cWW	cWW
117	IL_4WF9_112	4WF9	0.8898	Major groove intercalation	Y	5S rRNA	U	63	A	64	G	65	*	C	15	A	16	cWW	cWW
118	IL_8VTW_110	8VTW	0.9040	Major groove intercalation	1B	5S rRNA	C	65	A	66	G	67	*	C	17	G	18	cWW	cWW
119	IL_4V9F_101	4V9F	0.9256	Major groove intercalation	9	5S rRNA	C	64	A	65	G	66	*	C	15	G	16	cWW	cWW
120	IL_7DLZ_002	7DLZ	1.1581	Major groove intercalation	X	RNA (45-MER)	U	9	A	10	C	11	*	G	37	G	38	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CC	18
CAG*CG	18
GAC*GC	15
UAG*CG	8
UAC*GA	8
AAG*CU	8
GAU*AC	6
CAC*GG	5
UAC*GG	5
GAA*UC	5
UAG*CA	4
AAU*AU	4
GAC*GU	4
GAU*GC	3
CAU*AG	3
UAA*UA	2
GAG*CU	2
CAG*UG	1
CAA*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	120

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single bulged A (114)
Major groove intercalation (6)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.03 | Avg 0.83 | Max 2.16

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view

reading 676 atoms

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676 atoms created

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Coloring options: Nucleotide numbers

Motif IL_37497.7 Version IL_37497.7 of this group appears in releases 3.87 to 3.87 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_37497.7 Version IL_37497.7 of this group appears in releases 3.87 to 3.87

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Csv

Json