Motif IL_58602.1 Version IL_58602.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3D2V_003 | 3D2V | 1.0352 | 4 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | U | 47 | G | 48 | C | 51 | * | G | 64 | C | 65 | A | 68 | cWW | cWW | |
| 2 | IL_2GDI_004 | 2GDI | 0.7882 | 4 | cWH basepair and non-canonical AC | X | TPP riboswitch | U | 59 | G | 60 | C | 63 | * | G | 76 | C | 77 | A | 80 | cWW | cWW | |
| 3 | IL_2GDI_008 | 2GDI | 0.7866 | 4 | Y | TPP riboswitch | U | 59 | G | 60 | C | 63 | * | G | 76 | C | 77 | A | 80 | cWW | cWW | ||
| 4 | IL_3D2V_006 | 3D2V | 0.0000 | 4 | cWH basepair and non-canonical AC (H) | B | TPP riboswitch (THI element) | U | 47 | G | 48 | C | 51 | * | G | 64 | C | 65 | A | 68 | cWW | cWW | |
| 5 | IL_1S72_078 | 1S72 | 0.0433 | 2 | 0 | LSU rRNA | C | 2331 | A | 2332 | G | 2333 | * | C | 2351 | G | 2352 | G | 2355 | cWW | tHS | cWW | |
| 6 | IL_1DUQ_003 | 1DUQ | 0.1726 | 3 | C+D | THE REV BINDING ELEMENT | G | 204 | G | 205 | C | 207 | * | G | 223 | G | 224 | C | 227 | cWW | cWW | ||
| 7 | IL_1DUQ_007 | 1DUQ | 0.1840 | 3 | G+H | THE REV BINDING ELEMENT | G | 404 | G | 405 | C | 407 | * | G | 423 | G | 424 | C | 427 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAC*GCGCA | 2 |
| UGAUC*GCGUA | 2 |
| GGGC*GGUAC | 2 |
| CAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*CGC | 2 |
| GAU*CGU | 2 |
| GG*GUA | 2 |
| A*GAA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_58602.1 | Only in the parent motif |
|---|---|---|---|
| IL_22458.1 Compare | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 | IL_1DUQ_003, IL_1DUQ_007, IL_1S72_078 | IL_3BNP_003, IL_3BNP_002 |
| IL_28652.1 Compare | IL_1DUQ_003, IL_1DUQ_007 | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003, IL_1S72_078 | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1S72_037 |
| IL_65962.1 Compare | IL_1S72_078 | IL_3D2V_006, IL_3D2V_003, IL_1DUQ_003, IL_2GDI_008, IL_1DUQ_007, IL_2GDI_004 | IL_3F1H_085, IL_1L9A_004, IL_3F1H_011, IL_2ZJR_078, IL_1S72_076, IL_3F1H_079 |
Children motifs
| Child motif | Common motif instances | Only in IL_58602.1 | Only in the child motif |
|---|---|---|---|
| IL_58602.2 Compare | IL_3D2V_006, IL_3D2V_003, IL_1DUQ_003, IL_2GDI_008, IL_1S72_078, IL_2GDI_004 | IL_1DUQ_007 | |
| IL_58849.1 Compare | IL_1DUQ_007 | IL_3D2V_006, IL_3D2V_003, IL_1DUQ_003, IL_2GDI_008, IL_1S72_078, IL_2GDI_004 | IL_1CSL_001, IL_1S72_037, IL_1DUQ_001, IL_1DUQ_005, IL_1GID_008, IL_1FJG_045 |
- Annotations
-
- (4)
- cWH basepair and non-canonical AC (2)
- cWH basepair and non-canonical AC (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.04 | Avg 0.57 | Max 1.11
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