Motif IL_28652.1 Version IL_28652.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1DUQ_003 | 1DUQ | 0.2551 | 1 | C+D | THE REV BINDING ELEMENT | G | 204 | G | 205 | G | 206 | C | 207 | * | G | 223 | G | 224 | A | 226 | C | 227 | cWW | cWH | cWW | |
| 2 | IL_1DUQ_007 | 1DUQ | 0.2517 | 1 | G+H | THE REV BINDING ELEMENT | G | 404 | G | 405 | G | 406 | C | 407 | * | G | 423 | G | 424 | A | 426 | C | 427 | cWW | cWH | cWW | |
| 3 | IL_1DUQ_005 | 1DUQ | 0.0000 | 1 | E+F | THE REV BINDING ELEMENT | G | 304 | G | 305 | G | 306 | C | 307 | * | G | 323 | G | 324 | A | 326 | C | 327 | cWW | cWW | cWH | cWW |
| 4 | IL_1DUQ_001 | 1DUQ | 0.0124 | 1 | A+B | THE REV BINDING ELEMENT | G | 104 | G | 105 | G | 106 | C | 107 | * | G | 123 | G | 124 | A | 126 | C | 127 | cWW | cWW | cWH | cWW |
| 5 | IL_1CSL_001 | 1CSL | 0.0477 | 1 | A+B | RNA (13-mer) + RNA (15-mer) | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | cWW | cWH | cWW |
| 6 | IL_1S72_037 | 1S72 | 0.7416 | 0 | 0 | LSU rRNA | C | 1000 | U | 1001 | G | 1002 | U | 1003 | * | A | 965 | U | 966 | U | 967 | G | 968 | cWW | cwW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 5 |
| CUGU*AUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 5 |
| UG*UU | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_28652.1 | Only in the child motif |
|---|---|---|---|
| IL_70178.1 Compare | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001 | IL_1DUQ_003, IL_1S72_037, IL_1DUQ_007 | IL_1FJG_045 |
| IL_58602.1 Compare | IL_1DUQ_003, IL_1DUQ_007 | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1S72_037 | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003, IL_1S72_078 |
| IL_14877.1 Compare | IL_1S72_037 | IL_1DUQ_001, IL_1DUQ_005, IL_1DUQ_003, IL_1CSL_001, IL_1DUQ_007 | IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_2NOK_007, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1FJG_029, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003 |
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