Motif IL_62089.1 Version IL_62089.1 of this group appears in releases 0.2 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3F1H_064 | 3F1H | 0.8231 | 5 | A | 23S RRNA | A | 1669 | G | 1674 | * | C | 1990 | U | 1991 | U | 1993 | cWW | cWW | ||
| 2 | IL_2ZJR_092 | 2ZJR | 0.7876 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | tHS | cWW | cWW |
| 3 | IL_3F1H_096 | 3F1H | 0.8285 | 1 | A | 23S RRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ncWW | cWW | ||
| 4 | IL_2ZJR_063 | 2ZJR | 0.6478 | 5 | Intercalated tWH (H) | X | LSU rRNA | A | 1686 | G | 1691 | * | C | 1973 | U | 1974 | U | 1976 | cWW | cWW | |
| 5 | IL_1S72_062 | 1S72 | 0.0000 | 5 | Intercalated tWH (H) | 0 | LSU rRNA | A | 1747 | G | 1752 | * | C | 2031 | U | 2032 | U | 2034 | cWW | cWW | |
| 6 | IL_1S72_087 | 1S72 | 0.1347 | 1 | Major groove platform with intercalation (H) | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW |
| 7 | IL_2ZJR_023 | 2ZJR | 0.1425 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 3 |
| ACUCUG*CUGU | 1 |
| ACUUUG*CUGU | 1 |
| AUUCGG*CUGU | 1 |
| UG*UUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 3 |
| CUCU*UG | 1 |
| CUUU*UG | 1 |
| UUCG*UG | 1 |
| *U | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_62089.1 | Only in the parent motif |
|---|---|---|---|
| IL_53935.1 Compare | IL_2ZJR_023, IL_1S72_062, IL_2ZJR_063, IL_3F1H_064 | IL_3F1H_096, IL_1S72_087, IL_2ZJR_092 | IL_2ZJR_055, IL_2QWY_008, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1O9M_001, IL_1S72_005, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3MOJ_004, IL_1ZX7_001, IL_1S72_079, IL_1T0E_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005 |
| IL_40542.1 Compare | IL_2ZJR_092, IL_1S72_087, IL_3F1H_096 | IL_2ZJR_023, IL_1S72_062, IL_2ZJR_063, IL_3F1H_064 |
Children motifs
| Child motif | Common motif instances | Only in IL_62089.1 | Only in the child motif |
|---|---|---|---|
| IL_61831.1 Compare | IL_2ZJR_092, IL_1S72_087 | IL_2ZJR_023, IL_1S72_062, IL_2ZJR_063, IL_3F1H_064, IL_3F1H_096 | IL_2QBG_098, IL_2AW7_016, IL_3PYO_087 |
| IL_95015.1 Compare | IL_1S72_062, IL_2ZJR_063 | IL_2ZJR_023, IL_1S72_087, IL_2ZJR_092, IL_3F1H_064, IL_3F1H_096 | IL_3LOA_003, IL_3O58_082, IL_2QBG_065, IL_3O30_064, IL_2QEK_002, IL_2XZM_064, IL_3O58_095 |
| IL_87608.1 Compare | IL_2ZJR_023 | IL_3F1H_096, IL_3F1H_064, IL_2ZJR_092, IL_1S72_087, IL_1S72_062, IL_2ZJR_063 | IL_3O58_135, IL_3O58_124, IL_3O30_018, IL_1FJG_012, IL_2QWY_005 |
- Annotations
-
- (3)
- Intercalated tWH (H) (2)
- Major groove platform with intercalation (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.52 | Max 0.86
Coloring options: