Motif IL_73348.1 Version IL_73348.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_063 | 1VWW | 0.0000 | -1 | 5 | LSU rRNA | C | 1551 | G | 1552 | A | 1553 | A | 1554 | G | 1555 | * | U | 1572 | G | 1573 | G | 1574 | A | 1575 | G | 1576 | cWW | ntSH | ncWW | ncSH | ||
| 2 | IL_4CUV_035 | 4CUV | 0.2502 | 0 | 1 | LSU rRNA | U | 834 | G | 835 | A | 836 | A | 837 | G | 838 | * | U | 855 | G | 856 | G | 857 | A | 858 | G | 859 | cWW | ntSH | ntHS | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUGG*CGC | 1 |
| UGAAG*UGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUG*G | 1 |
| GAA*GGA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_73348.1 | Only in the parent motif |
|---|---|---|---|
| IL_87904.7 Compare | IL_4CUV_035 | IL_1VWW_063 | IL_2AW7_058, IL_4NVV_091, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2QBG_019, IL_1S72_021, IL_4NVV_017, IL_4NVV_023, IL_1VW3_083, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4IOA_012, IL_4NVV_075, IL_4CUX_077, IL_3DHS_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_73348.1 | Only in the child motif |
|---|---|---|---|
| IL_37976.1 Compare | IL_4CUV_035 | IL_1VWW_063 | IL_2AW7_058, IL_4W21_140, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_4W23_080, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2QBG_019, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_3J7A_047, IL_4BPP_090, IL_2A64_005, IL_1VW3_083, IL_2A64_006, IL_1VX6_113, IL_3IWN_002, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_4IOA_089, IL_3U5F_091, IL_4W21_097, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4IOA_012, IL_4W23_013, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072, IL_3DHS_004 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-L-R-tHS-cWW
- Heat map statistics
- Min 0.25 | Avg 0.13 | Max 0.25
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