#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-63-74-5
1 IL_6CZR_3656CZR0.474521a SSU rRNAC1185A1186U1187G1188*U1035A1038U1039G1040cWWncSWncSWcWW
2 IL_7KJT_0037KJT0.23890A tRNAG2C3C4C5*G68G69C70C71cWWncWWcWW
3 IL_4EYA_0084EYA0.19880Tandem non-canonical cWW pairsl+kRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWcWW
4 IL_4EYA_0104EYA0.26070Tandem non-canonical cWW pairsm+nRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWncWW
5 IL_1MFQ_0041MFQ0.00000Tandem non-canonical cWW pairsA SRP RNAG138A139C140C141*G156A157C158C159cWWncWWncWWcWW
6 IL_1D4R_0031D4R0.15880Tandem non-canonical cWW pairsB+A29-MER OF MODIFIED SRP RNA HELIX 6G4A5C6C7*G22A23C24C25cWWcWWcWWcWW
7 IL_1JID_0021JID0.18370Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
8 IL_1D4R_0011D4R0.20900Tandem non-canonical cWW pairsB+A29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWacWWcWW
9 IL_3WBM_0023WBM0.21180Tandem non-canonical cWW pairsX+YRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBncWWcWW
10 IL_3WBM_0033WBM0.21600Tandem non-canonical cWW pairsY+XRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBcWWcWW
11 IL_7VYX_0027VYX0.24480CsgRNAG50G51U52G53*C13U14U15C16cWWncWWancwWncWW
12 IL_5EW4_0025EW40.29710Tandem non-canonical cWW pairsA+BRNA (22-mer)C14C15C16G17*C8C9C10G11cWWncWBncWBcWW
13 IL_6JDV_0026JDV0.31870Tandem non-canonical cWW pairsBsgRNAA63C64C65G66*C35C36U37U38cWWcWWcWW
14 IL_4V88_4384V880.37040Tandem non-canonical cWW pairsA6 SSU rRNAG1074C1075A1076C1077*G1041G1042A1043U1044cWWncBWcWWcWW
15 IL_8C3A_4448C3A0.34150Tandem non-canonical cWW pairs (H)CM SSU rRNAG1059C1060A1061C1062*G1026G1027A1028U1029cWWncWWacWWcWW
16 IL_5J7L_2835J7L0.31740Tandem non-canonical cWW pairsDA LSU rRNAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
17 IL_8C3A_1098C3A0.35230Tandem non-canonical cWW pairs (H)1 LSU rRNAU2690U2691G2692A2693*U2707A2708C2709A2710cWWcWWcWW
18 IL_5TBW_1005TBW0.36550Tandem non-canonical cWW pairs1 LSU rRNAU2718U2719G2720A2721*U2735A2736C2737A2738cWWcWWcWW
19 IL_8C3A_4388C3A0.38651Tandem non-canonical cWW pairs (H)CM SSU rRNAC935A936A937G938*C859G860G862G863cWWcWWcWWcWW
20 IL_4V88_4314V880.41401Tandem non-canonical cWW pairsA6 SSU rRNAC950A951A952G953*C874G875G877G878cWWcWWcWWcWW
21 IL_6XJQ_0026XJQ0.38671ASelf-alkylating ribozyme (58-MER)C48G49A50U51*A10G11A13G14cWWcWScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACC*GACC4
CUUG*CUUG2
ACCC*GACU2
GCAC*GGAU2
UUGA*UACA2
CAAG*CGGGG2
CAUG*UGCAUG1
GCCC*GGCC1
GGUG*CUUC1
CCCG*CCCG1
ACCG*CCUU1
GAAG*CGGC1
CGAU*AGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
AC*AC4
UU*UU2
CC*AC2
CA*GA2
UG*AC2
AA*GGG2
AU*GCAU1
CC*GC1
GU*UU1
CC*CC1
CC*CU1
AA*GG1
GA*GAA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (14)
  • (4)
  • Tandem non-canonical cWW pairs (H) (3)
  • Basepair signature
    cWW-L-R-cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.35 | Max 0.64
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