Motif IL_73915.1 Version IL_73915.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_6CZR_365 | 6CZR | 0.4745 | 2 | 1a | SSU rRNA | C | 1185 | A | 1186 | U | 1187 | G | 1188 | * | U | 1035 | A | 1038 | U | 1039 | G | 1040 | cWW | ncSW | ncSW | cWW | ||
2 | IL_7KJT_003 | 7KJT | 0.2389 | 0 | A | tRNA | G | 2 | C | 3 | C | 4 | C | 5 | * | G | 68 | G | 69 | C | 70 | C | 71 | cWW | ncWW | cWW | |||
3 | IL_4EYA_008 | 4EYA | 0.1988 | 0 | Tandem non-canonical cWW pairs | l+k | RNA (12-mer) | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | ncwW | ncwW | cWW | |
4 | IL_4EYA_010 | 4EYA | 0.2607 | 0 | Tandem non-canonical cWW pairs | m+n | RNA (12-mer) | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | ncwW | ncwW | ncWW | |
5 | IL_1MFQ_004 | 1MFQ | 0.0000 | 0 | Tandem non-canonical cWW pairs | A | SRP RNA | G | 138 | A | 139 | C | 140 | C | 141 | * | G | 156 | A | 157 | C | 158 | C | 159 | cWW | ncWW | ncWW | cWW | |
6 | IL_1D4R_003 | 1D4R | 0.1588 | 0 | Tandem non-canonical cWW pairs | B+A | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 4 | A | 5 | C | 6 | C | 7 | * | G | 22 | A | 23 | C | 24 | C | 25 | cWW | cWW | cWW | cWW | |
7 | IL_1JID_002 | 1JID | 0.1837 | 0 | Tandem non-canonical cWW pairs | B | HELIX 6 OF HUMAN SRP RNA | G | 138 | A | 139 | C | 140 | C | 141 | * | G | 156 | A | 157 | C | 158 | C | 159 | cWW | cWW | cWW | cWW | |
8 | IL_1D4R_001 | 1D4R | 0.2090 | 0 | Tandem non-canonical cWW pairs | B+A | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 22 | A | 23 | C | 24 | C | 25 | * | G | 4 | A | 5 | C | 6 | C | 7 | cWW | cWWa | cWW | cWW | |
9 | IL_3WBM_002 | 3WBM | 0.2118 | 0 | Tandem non-canonical cWW pairs | X+Y | RNA (25-MER) | A | 10 | C | 11 | C | 12 | C | 13 | * | G | 14 | A | 15 | C | 16 | U | 17 | cWW | ncWB | ncWW | cWW | |
10 | IL_3WBM_003 | 3WBM | 0.2160 | 0 | Tandem non-canonical cWW pairs | Y+X | RNA (25-MER) | A | 10 | C | 11 | C | 12 | C | 13 | * | G | 14 | A | 15 | C | 16 | U | 17 | cWW | ncWB | cWW | cWW | |
11 | IL_7VYX_002 | 7VYX | 0.2448 | 0 | C | sgRNA | G | 50 | G | 51 | U | 52 | G | 53 | * | C | 13 | U | 14 | U | 15 | C | 16 | cWW | ncWWa | ncwW | ncWW | ||
12 | IL_5EW4_002 | 5EW4 | 0.2971 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (22-mer) | C | 14 | C | 15 | C | 16 | G | 17 | * | C | 8 | C | 9 | C | 10 | G | 11 | cWW | ncWB | ncWB | cWW | |
13 | IL_6JDV_002 | 6JDV | 0.3187 | 0 | Tandem non-canonical cWW pairs | B | sgRNA | A | 63 | C | 64 | C | 65 | G | 66 | * | C | 35 | C | 36 | U | 37 | U | 38 | cWW | cWW | cWW | ||
14 | IL_4V88_438 | 4V88 | 0.3704 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | G | 1074 | C | 1075 | A | 1076 | C | 1077 | * | G | 1041 | G | 1042 | A | 1043 | U | 1044 | cWW | ncBW | cWW | cWW | |
15 | IL_8C3A_444 | 8C3A | 0.3415 | 0 | Tandem non-canonical cWW pairs (H) | CM | SSU rRNA | G | 1059 | C | 1060 | A | 1061 | C | 1062 | * | G | 1026 | G | 1027 | A | 1028 | U | 1029 | cWW | ncWWa | cWW | cWW | |
16 | IL_5J7L_283 | 5J7L | 0.3174 | 0 | Tandem non-canonical cWW pairs | DA | LSU rRNA | G | 1038 | A | 1039 | A | 1040 | G | 1041 | * | C | 1114 | G | 1115 | G | 1116 | C | 1117 | cWW | cWW | cWW | cWW | |
17 | IL_8C3A_109 | 8C3A | 0.3523 | 0 | Tandem non-canonical cWW pairs (H) | 1 | LSU rRNA | U | 2690 | U | 2691 | G | 2692 | A | 2693 | * | U | 2707 | A | 2708 | C | 2709 | A | 2710 | cWW | cWW | cWW | ||
18 | IL_5TBW_100 | 5TBW | 0.3655 | 0 | Tandem non-canonical cWW pairs | 1 | LSU rRNA | U | 2718 | U | 2719 | G | 2720 | A | 2721 | * | U | 2735 | A | 2736 | C | 2737 | A | 2738 | cWW | cWW | cWW | ||
19 | IL_8C3A_438 | 8C3A | 0.3865 | 1 | Tandem non-canonical cWW pairs (H) | CM | SSU rRNA | C | 935 | A | 936 | A | 937 | G | 938 | * | C | 859 | G | 860 | G | 862 | G | 863 | cWW | cWW | cWW | cWW | |
20 | IL_4V88_431 | 4V88 | 0.4140 | 1 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | C | 950 | A | 951 | A | 952 | G | 953 | * | C | 874 | G | 875 | G | 877 | G | 878 | cWW | cWW | cWW | cWW | |
21 | IL_6XJQ_002 | 6XJQ | 0.3867 | 1 | A | Self-alkylating ribozyme (58-MER) | C | 48 | G | 49 | A | 50 | U | 51 | * | A | 10 | G | 11 | A | 13 | G | 14 | cWW | cWS | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GACC*GACC | 4 |
CUUG*CUUG | 2 |
ACCC*GACU | 2 |
GCAC*GGAU | 2 |
UUGA*UACA | 2 |
CAAG*CGGGG | 2 |
CAUG*UGCAUG | 1 |
GCCC*GGCC | 1 |
GGUG*CUUC | 1 |
CCCG*CCCG | 1 |
ACCG*CCUU | 1 |
GAAG*CGGC | 1 |
CGAU*AGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AC*AC | 4 |
UU*UU | 2 |
CC*AC | 2 |
CA*GA | 2 |
UG*AC | 2 |
AA*GGG | 2 |
AU*GCAU | 1 |
CC*GC | 1 |
GU*UU | 1 |
CC*CC | 1 |
CC*CU | 1 |
AA*GG | 1 |
GA*GAA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (14)
- (4)
- Tandem non-canonical cWW pairs (H) (3)
- Basepair signature
- cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.35 | Max 0.64
Coloring options: