#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-73-84-75-67-8
1 IL_2QWY_0012QWY0.53500ASAM-II riboswitchC16G17U18A19U20*A46A47A48A49G50cWWtSHtHScWW
2 IL_4BPP_0284BPP0.53420A18S RRNAG509A510A511C512A513*U525U526A527G528C529cWWcWWtSHntHScWW
3 IL_3U5H_1123U5H0.46650525S rRNAU2835C2836A2837A2838G2839*C2849G2850A2851C2852A2853cWWntSHtHScWW
4 IL_2QBG_0942QBG0.39120B23S rRNAC2466C2467A2468A2469G2470*C2480G2481A2482C2483G2484cWWncWBntSHtHScWW
5 IL_4A1B_1104A1B0.38280126S RRNAC2823C2824A2825A2826G2827*C2837G2838A2839C2840G2841cWWncWBtSHtHScWW
6 IL_4IOA_0894IOA0.40620Triple shearedX LSU rRNAC2445C2446G2447A2448G2449*C2459G2460G2461C2462G2463cWWncWBntSHtHScWW
7 IL_3V2F_0923V2F0.40550A23S Ribosomal RNAC2466C2467G2468A2469G2470*C2480G2481G2482C2483G2484cWWcWBtHScWW
8 IL_1U6B_0021U6B0.36110Triple shearedB197-MERG84C85A86A87C88*G56A57A58A59C60cWWncWWtSHtHScWW
9 IL_1S72_0831S720.32610Triple sheared (H)0 LSU rRNAG2501C2502A2503A2504G2505*C2515G2516A2517C2518C2519cWWcWBntSHtHScWW
10 IL_2AW7_0582AW70.42470A16S ribosomal RNAG1272C1273A1274A1275G1276*C1259G1260A1261C1262C1263cWWncWBtSHtHScWW
11 IL_3U5F_0913U5F0.36720618S rRNAA1678G1679G1680A1681U1682*A1719G1720A1721A1722U1723cWWtSHtSHcWW
12 IL_1S72_0281S720.355300 LSU rRNAU815G816G817A818A819*U794G795A796A797G798cWWtSHtSHtHScWW
13 IL_3U5H_0323U5H0.38860525S rRNAU855G856G857A858G859*U834G835A836A837G838cWWtSHtSHtHScWW
14 IL_3V2F_0213V2F0.36830A23S Ribosomal RNAU724G725G726A727G728*U703G704A705A706G707cWWtSHtSHtHScWW
15 IL_2QBG_0242QBG0.35660B23S rRNAU724G725G726A727G728*U703G704A705A706G707cWWtSHtSHtHScWW
16 IL_2QBG_0682QBG0.29950B23S rRNAU1736G1737G1738A1739G1740*U1720G1721A1722G1723G1724cWWntSHtSHtHScWW
17 IL_4BPP_0904BPP0.23320A18S RRNAU1649G1650G1651A1652C1653*G1672A1673A1674A1675A1676cWWtSHtSHtHScWW
18 IL_2A64_0052A640.26430Triple shearedAribonuclease P RNAC297G298G299A300G301*C284G285A286A287G288cWWtSHntSHtHScWW
19 IL_3DHS_0043DHS0.26970Triple shearedARNase P RNAC297G298G299A300G301*C284G285A286A287G288cWWtSHcWWncSH
20 IL_2A64_0062A640.21060Triple shearedAribonuclease P RNAC347G348G349A350G351*C378G379A380A381G382cWWtSHtSHcWW
21 IL_4IOA_0704IOA0.16300Triple shearedX LSU rRNAU1848G1849G1850A1851G1852*C1865G1866A1867A1868A1869cWWtSHtSHntHScWW
22 IL_3V2F_0723V2F0.00000A23S Ribosomal RNAG1856G1857G1858A1859G1860*C1882G1883A1884A1885C1886cWWtSHtSHtHScWW
23 IL_3U5H_0753U5H0.19440525S rRNAA1806G1807G1808A1809A1810*U1645G1646A1647A1648U1649cWWtSHtSHtHScWW
24 IL_3IWN_0023IWN0.27540Triple shearedAC-di-GMP riboswitchG31G32A33C34G35*C12A13A14A15C16cWWtSHntHScWW
25 IL_4FAW_0024FAW0.23910AGroup II catalytic intron D1-D4-1G113G114A115C116G117*C70U71A72A73C74cWWtSHtHScWW
26 IL_4A1B_1254A1B0.30200126S RRNAG3189A3190G3191C3192G3193*U3217U3218A3219A3220C3221cWWtSHntSHntHSacWW
27 IL_3UCZ_0013UCZ0.36470RRNA (92-MER)G41G42A43C44G45*C22A23A24A25C26cWWtSHntHScWW
28 IL_1S72_0211S720.52100AAA cross-strand stack (H)0 LSU rRNAG679G680G681A682G683*C663U664A665A666C667cWWtSHntHWcWW
29 IL_2QBG_0192QBG0.51840B23S rRNAG618G619G620A621G622*U606U607A608A609C610cWWtSHntHWcWW
30 IL_3V2F_0163V2F0.53490A23S Ribosomal RNAC618G619G620A621G622*U606U607A608A609G610cWWtSHntHWcWW
31 IL_4IOA_0124IOA0.65380AAA cross-strand stackX LSU rRNAC629G630G631A632G633*U616U617A618A619G620cWWtSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGAG*CGAAG3
CCAAG*CGACG2
CCGAG*CGGCG2
GCAAG*CGACC2
UGGAG*UGAAG2
GGACG*CAAAC2
CGUAU*AAAAG1
GAACA*UUAGC1
UCAAG*CGACA1
GCAAC*GAAAC1
AGGAU*AGAAU1
UGGAA*UGAAG1
UGAAG*UGGAG1
UGGAG*UGAGG1
UGGAC*GAAAA1
UGGAG*CGAAA1
GGGAG*CGAAC1
AGGAA*UGAAU1
GGACG*CUAAC1
GAGCG*UUAAC1
GGGAG*CUAAC1
GGGAG*UUAAC1
UUAAG*CGGAG1
CGGAG*UUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GGA*GAA10
CAA*GAC5
GGA*UAA3
CGA*GGC2
GAC*AAA2
GUA*AAA1
AAC*UAG1
CAA*AAA1
GAA*GGA1
GGA*GAG1
GGA*AAA1
GAC*UAA1
AGC*UAA1
UAA*GGA1
Annotations
  • (21)
  • Triple sheared (7)
  • AAA cross-strand stack (H) (1)
  • Triple sheared (H) (1)
  • AAA cross-strand stack (1)
  • Basepair signature
    cWW-tSH-tSH-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.45 | Max 0.84
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