Motif IL_89002.1 Version IL_89002.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9	1-9	2-8	3-7	4-7	5-6
1	IL_7A0S_051	7A0S	0.6062	1	UAA/GAN variation	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435		ntWH			cWW
2	IL_5TBW_048	5TBW	0.6429	1	UAA/GAN	1	LSU rRNA	U	1167	U	1168	A	1169	A	1170	G	1171	*	C	1328	U	1329	A	1330	A	1332	cWW	tWH	ntHW		cWW
3	IL_5TBW_120	5TBW	0.5341	1	UAA/GAN	1	LSU rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW	tWH		tHS	cWW
4	IL_4V9F_037	4V9F	0.6078	1	UAA/GAN	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW	tWH		tHS	cWW
5	IL_7RQB_036	7RQB	0.6244	1	UAA/GAN	1A	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
6	IL_4WF9_036	4WF9	0.6364	1	UAA/GAN	X	LSU rRNA	C	1042	U	1043	A	1044	A	1045	G	1046	*	C	1197	G	1198	A	1199	G	1201	cWW	tWH		tHS	cWW
7	IL_5J7L_277	5J7L	0.6232	1	UAA/GAN	DA	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
8	IL_7A0S_033	7A0S	0.6259	1	UAA/GAN	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW	tWH		tHS	cWW
9	IL_7RQB_052	7RQB	0.5023	1	UAA/GAN	1A	LSU rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
10	IL_4V9F_052	4V9F	0.7018	3	UAA/GAN	0	LSU rRNA	C	1456	U	1457	A	1458	A	1459	G	1460	*	C	1483	G	1484	A	1485	G	1489	cWW	tWH		tHS	cWW
11	IL_5TBW_063	5TBW	0.6709	2	UAA/GAN	1	LSU rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW	tWH		tHS	cWW
12	IL_5J7L_295	5J7L	0.4377	1	UAA/GAN	DA	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
13	IL_7RQB_055	7RQB	0.3738	1	UAA/GAN	1A	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
14	IL_5J7L_292	5J7L	0.1324	1	UAA/GAN	DA	LSU rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
15	IL_7A0S_048	7A0S	0.1165	1	UAA/GAN	X	LSU rRNA	C	1364	U	1365	A	1366	A	1367	G	1368	*	C	1389	G	1390	A	1391	G	1393	cWW	tWH		tHS	cWW
16	IL_4WF9_051	4WF9	0.0000	1	UAA/GAN	X	LSU rRNA	C	1388	U	1389	A	1390	A	1391	G	1392	*	C	1413	G	1414	A	1415	G	1417	cWW	ntWH		tHS	cWW
17	IL_3OXE_004	3OXE	0.6073	2	UAA/GAN related	A	domain II of glycine riboswitch	G	38	C	39	A	40	A	41	G	42	*	U	61	G	62	A	63	C	66	cWW			tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	6
CUAAG*CGAUG	4
CUAAA*UGAUG	1
UUAAG*CUAUA	1
AUUAU*AGAAU	1
UUAAG*CGAGA	1
CUAAG*CGAAAUG	1
CUAAG*CGAAAG	1
GCAAG*UGAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	6
UAA*GAU	5
UAA*UAU	1
UUA*GAA	1
UAA*GAG	1
UAA*GAAAU	1
UAA*GAAA	1
CAA*GAAA	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UAA/GAN (15)
UAA/GAN related (1)
UAA/GAN variation (1)
Basepair signature: cWW-L-R-L-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.38 | Max 0.90

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Coloring options: Nucleotide numbers

Motif IL_89002.1 Version IL_89002.1 of this group appears in releases 3.77 to 3.79 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_89002.1 Version IL_89002.1 of this group appears in releases 3.77 to 3.79

Download

Csv

Json