#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 91-92-83-74-75-6
1 IL_3OXE_0043OXE0.67602Adomain II of glycine riboswitchG38C39A40A41G42*U61G62A63C66cWWtHScWW
2 IL_5J7L_2925J7L0.40571UAA/GANDA LSU rRNAC1351U1352A1353A1354G1355*C1376G1377A1378G1380cWWtWHtHScWW
3 IL_7A0S_0487A0S0.43481UAA/GANX LSU rRNAC1364U1365A1366A1367G1368*C1389G1390A1391G1393cWWtWHtHScWW
4 IL_4WF9_0514WF90.14261UAA/GANX LSU rRNAC1388U1389A1390A1391G1392*C1413G1414A1415G1417cWWntWHtHScWW
5 IL_8VTW_0518VTW0.12361UAA/GAN (H)1A LSU rRNAC1351U1352A1353A1354G1355*C1376G1377A1378G1380cWWtWHtHScWW
6 IL_8VTW_0548VTW0.00001UAA/GAN (H)1A LSU rRNAC1577U1578A1579A1580G1581*C1417G1418A1419G1421cWWtWHtHScWW
7 IL_5J7L_2955J7L0.10521UAA/GANDA LSU rRNAC1577U1578A1579A1580G1581*C1417G1418A1419G1421cWWtWHtHScWW
8 IL_7A0S_0337A0S0.16731UAA/GANX LSU rRNAC1009U1010A1011A1012G1013*C1164G1165A1166G1168cWWtWHtHScWW
9 IL_5J7L_2775J7L0.17171UAA/GANDA LSU rRNAC998U999A1000A1001G1002*C1153G1154A1155G1157cWWtWHtHScWW
10 IL_4WF9_0364WF90.18861UAA/GANX LSU rRNAC1042U1043A1044A1045G1046*C1197G1198A1199G1201cWWtWHtHScWW
11 IL_8VTW_0358VTW0.19421UAA/GAN (H)1A LSU rRNAC998U999A1000A1001G1002*C1153G1154A1155G1157cWWtWHtHScWW
12 IL_4V9F_0374V9F0.18421UAA/GAN0 LSU rRNAU1095U1096A1097A1098G1099*C1257G1258A1259A1261cWWtWHtHScWW
13 IL_5TBW_1205TBW0.24131UAA/GAN1 LSU rRNAA3103U3104U3105A3106U3107*A3127G3128A3129U3131cWWtWHtHScWW
14 IL_8C3A_1298C3A0.23661UAA/GAN (H)1 LSU rRNAA3075U3076U3077A3078U3079*A3099G3100A3101U3103cWWtWHtHScWW
15 IL_8C3A_0518C3A0.26511UAA/GAN (H)1 LSU rRNAU1163U1164A1165A1166A1167*U1324U1325A1326A1328cWWtWHntHWcWW
16 IL_5TBW_0485TBW0.24681UAA/GAN1 LSU rRNAU1167U1168A1169A1170G1171*C1328U1329A1330A1332cWWtWHntHWcWW
17 IL_4V9F_0524V9F0.22223UAA/GAN0 LSU rRNAC1456U1457A1458A1459G1460*C1483G1484A1485G1489cWWtWHtHScWW
18 IL_5TBW_0635TBW0.23792UAA/GAN1 LSU rRNAC1532U1533A1534A1535G1536*C1585G1586A1587G1590cWWtWHtHScWW
19 IL_8C3A_0678C3A0.23392UAA/GAN (H)1 LSU rRNAC1528U1529A1530A1531G1532*C1581G1582A1583G1586cWWtWHtHScWW
20 IL_7A0S_0517A0S0.49431UAA/GANX LSU rRNAC1593U1594A1595A1596A1597*U1431G1432A1433G1435ntWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAAG*CGAAG6
CUAAG*CGAUG4
AUUAU*AGAAU2
CUAAG*CGAAAG2
GCAAG*UGAAAC1
UUAAG*CGAGA1
UUAAA*UUAUA1
UUAAG*CUAUA1
CUAAG*CGAAAUG1
CUAAA*UGAUG1
Non-Watson-Crick part of the motif
SequenceCounts
UAA*GAA6
UAA*GAU5
UUA*GAA2
UAA*UAU2
UAA*GAAA2
CAA*GAAA1
UAA*GAG1
UAA*GAAAU1

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UAA/GAN (13)
  • UAA/GAN (H) (6)
  • (1)
  • Basepair signature
    cWW-tWH-R-L-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.37 | Max 0.90
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