Motif IL_89002.3 Version IL_89002.3 of this group appears in releases 3.87 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | 5-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3OXE_004 | 3OXE | 0.6760 | 2 | A | domain II of glycine riboswitch | G | 38 | C | 39 | A | 40 | A | 41 | G | 42 | * | U | 61 | G | 62 | A | 63 | C | 66 | cWW | tHS | cWW | |||
2 | IL_5J7L_292 | 5J7L | 0.4057 | 1 | UAA/GAN | DA | LSU rRNA | C | 1351 | U | 1352 | A | 1353 | A | 1354 | G | 1355 | * | C | 1376 | G | 1377 | A | 1378 | G | 1380 | cWW | tWH | tHS | cWW | |
3 | IL_7A0S_048 | 7A0S | 0.4348 | 1 | UAA/GAN | X | LSU rRNA | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | * | C | 1389 | G | 1390 | A | 1391 | G | 1393 | cWW | tWH | tHS | cWW | |
4 | IL_4WF9_051 | 4WF9 | 0.1426 | 1 | UAA/GAN | X | LSU rRNA | C | 1388 | U | 1389 | A | 1390 | A | 1391 | G | 1392 | * | C | 1413 | G | 1414 | A | 1415 | G | 1417 | cWW | ntWH | tHS | cWW | |
5 | IL_8VTW_051 | 8VTW | 0.1236 | 1 | UAA/GAN (H) | 1A | LSU rRNA | C | 1351 | U | 1352 | A | 1353 | A | 1354 | G | 1355 | * | C | 1376 | G | 1377 | A | 1378 | G | 1380 | cWW | tWH | tHS | cWW | |
6 | IL_8VTW_054 | 8VTW | 0.0000 | 1 | UAA/GAN (H) | 1A | LSU rRNA | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | * | C | 1417 | G | 1418 | A | 1419 | G | 1421 | cWW | tWH | tHS | cWW | |
7 | IL_5J7L_295 | 5J7L | 0.1052 | 1 | UAA/GAN | DA | LSU rRNA | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | * | C | 1417 | G | 1418 | A | 1419 | G | 1421 | cWW | tWH | tHS | cWW | |
8 | IL_7A0S_033 | 7A0S | 0.1673 | 1 | UAA/GAN | X | LSU rRNA | C | 1009 | U | 1010 | A | 1011 | A | 1012 | G | 1013 | * | C | 1164 | G | 1165 | A | 1166 | G | 1168 | cWW | tWH | tHS | cWW | |
9 | IL_5J7L_277 | 5J7L | 0.1717 | 1 | UAA/GAN | DA | LSU rRNA | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | * | C | 1153 | G | 1154 | A | 1155 | G | 1157 | cWW | tWH | tHS | cWW | |
10 | IL_4WF9_036 | 4WF9 | 0.1886 | 1 | UAA/GAN | X | LSU rRNA | C | 1042 | U | 1043 | A | 1044 | A | 1045 | G | 1046 | * | C | 1197 | G | 1198 | A | 1199 | G | 1201 | cWW | tWH | tHS | cWW | |
11 | IL_8VTW_035 | 8VTW | 0.1942 | 1 | UAA/GAN (H) | 1A | LSU rRNA | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | * | C | 1153 | G | 1154 | A | 1155 | G | 1157 | cWW | tWH | tHS | cWW | |
12 | IL_4V9F_037 | 4V9F | 0.1842 | 1 | UAA/GAN | 0 | LSU rRNA | U | 1095 | U | 1096 | A | 1097 | A | 1098 | G | 1099 | * | C | 1257 | G | 1258 | A | 1259 | A | 1261 | cWW | tWH | tHS | cWW | |
13 | IL_5TBW_120 | 5TBW | 0.2413 | 1 | UAA/GAN | 1 | LSU rRNA | A | 3103 | U | 3104 | U | 3105 | A | 3106 | U | 3107 | * | A | 3127 | G | 3128 | A | 3129 | U | 3131 | cWW | tWH | tHS | cWW | |
14 | IL_8C3A_129 | 8C3A | 0.2366 | 1 | UAA/GAN (H) | 1 | LSU rRNA | A | 3075 | U | 3076 | U | 3077 | A | 3078 | U | 3079 | * | A | 3099 | G | 3100 | A | 3101 | U | 3103 | cWW | tWH | tHS | cWW | |
15 | IL_8C3A_051 | 8C3A | 0.2651 | 1 | UAA/GAN (H) | 1 | LSU rRNA | U | 1163 | U | 1164 | A | 1165 | A | 1166 | A | 1167 | * | U | 1324 | U | 1325 | A | 1326 | A | 1328 | cWW | tWH | ntHW | cWW | |
16 | IL_5TBW_048 | 5TBW | 0.2468 | 1 | UAA/GAN | 1 | LSU rRNA | U | 1167 | U | 1168 | A | 1169 | A | 1170 | G | 1171 | * | C | 1328 | U | 1329 | A | 1330 | A | 1332 | cWW | tWH | ntHW | cWW | |
17 | IL_4V9F_052 | 4V9F | 0.2222 | 3 | UAA/GAN | 0 | LSU rRNA | C | 1456 | U | 1457 | A | 1458 | A | 1459 | G | 1460 | * | C | 1483 | G | 1484 | A | 1485 | G | 1489 | cWW | tWH | tHS | cWW | |
18 | IL_5TBW_063 | 5TBW | 0.2379 | 2 | UAA/GAN | 1 | LSU rRNA | C | 1532 | U | 1533 | A | 1534 | A | 1535 | G | 1536 | * | C | 1585 | G | 1586 | A | 1587 | G | 1590 | cWW | tWH | tHS | cWW | |
19 | IL_8C3A_067 | 8C3A | 0.2339 | 2 | UAA/GAN (H) | 1 | LSU rRNA | C | 1528 | U | 1529 | A | 1530 | A | 1531 | G | 1532 | * | C | 1581 | G | 1582 | A | 1583 | G | 1586 | cWW | tWH | tHS | cWW | |
20 | IL_7A0S_051 | 7A0S | 0.4943 | 1 | UAA/GAN | X | LSU rRNA | C | 1593 | U | 1594 | A | 1595 | A | 1596 | A | 1597 | * | U | 1431 | G | 1432 | A | 1433 | G | 1435 | ntWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUAAG*CGAAG | 6 |
CUAAG*CGAUG | 4 |
AUUAU*AGAAU | 2 |
CUAAG*CGAAAG | 2 |
GCAAG*UGAAAC | 1 |
UUAAG*CGAGA | 1 |
UUAAA*UUAUA | 1 |
UUAAG*CUAUA | 1 |
CUAAG*CGAAAUG | 1 |
CUAAA*UGAUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAA*GAA | 6 |
UAA*GAU | 5 |
UUA*GAA | 2 |
UAA*UAU | 2 |
UAA*GAAA | 2 |
CAA*GAAA | 1 |
UAA*GAG | 1 |
UAA*GAAAU | 1 |
- Annotations
-
- UAA/GAN (13)
- UAA/GAN (H) (6)
- (1)
- Basepair signature
- cWW-tWH-R-L-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.37 | Max 0.90
Coloring options: