Motif IL_92321.3 Version IL_92321.3 of this group appears in releases 1.1 to 1.4

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-11	3-10	4-9	5-8	6-7
1	IL_4A1B_017	4A1B	0.7746	0	1	26S RRNA	G	457	G	458	G	459	A	460	A	461	G	462	*	C	516	A	517	G	518	A	519	A	520	C	521	cWW	ntSH				cWW
2	IL_4A1B_037	4A1B	0.2261	1	1	26S RRNA	G	858	U	859	G	860	A	861	A	862	G	863	*	U	880	G	881	G	882	A	883	A	884	C	886	cWW		ntSH	tHS	tHS	cWW
3	IL_1FJG_053	1FJG	0.0000	0	A	SSU rRNA	A	1329	U	1330	G	1331	A	1332	A	1333	G	1334	*	C	1303	G	1304	G	1305	A	1306	U	1307	U	1308	cWW	cwW	tSH	tHS	tHS	cWW
4	IL_2AW7_059	2AW7	0.1360	0	A	16S ribosomal RNA	A	1329	U	1330	G	1331	A	1332	A	1333	G	1334	*	C	1303	G	1304	G	1305	A	1306	U	1307	U	1308	cWW	cwW	tSH	ntHS	tHS	cWW
5	IL_2XZM_080	2XZM	0.2040	0	A	18S RRNA	U	1538	U	1539	G	1540	A	1541	A	1542	C	1543	*	G	1512	G	1513	G	1514	A	1515	U	1516	A	1517	cWW	cwW	tSH	ntHS	tHS	cWW
6	IL_3U5F_079	3U5F	0.2194	0	6	18S rRNA	U	1566	U	1567	C	1568	A	1569	A	1570	C	1571	*	G	1540	G	1541	G	1542	A	1543	U	1544	A	1545	cWW	cwW		tHS	tHS	cWW
7	IL_3U5H_027	3U5H	0.2676	0	5	25S rRNA	C	758	U	759	G	760	A	761	U	762	G	763	*	C	768	G	769	G	770	A	771	U	772	G	773	cWW	cwW	tSH	ntHS	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGAAG*CGGAUU	2
GGGAAG*CAGAAC	1
GUGAAG*UGGAAGC	1
UUGAAC*GGGAUA	1
UUCAAC*GGGAUA	1
CUGAUG*CGGAUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAA*GGAU	3
GGAA*AGAA	1
UGAA*GGAAG	1
UCAA*GGAU	1
UGAU*GGAU	1

Release history

Release	1.1	1.2	1.3	1.4
Date	2013-04-08	2013-05-04	2013-06-01	2013-07-01
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_92321.3	Only in the parent motif
IL_92321.2 Compare	IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4A1B_017, IL_3U5H_027, IL_1FJG_053, IL_2XZM_080		IL_2ZJR_026

Children motifs

Child motif	Common motif instances	Only in IL_92321.3	Only in the child motif
IL_92321.4 Compare	IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4A1B_017, IL_3U5H_027, IL_1FJG_053	IL_2XZM_080	IL_4BPP_078

Annotations: (7)
Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
Heat map statistics: Min 0.14 | Avg 0.35 | Max 0.86

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Coloring options: Nucleotide numbers

Motif IL_92321.3 Version IL_92321.3 of this group appears in releases 1.1 to 1.4 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_92321.3 Version IL_92321.3 of this group appears in releases 1.1 to 1.4

Download

Csv

Json