#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-104-95-86-7
1 IL_4A1B_0174A1B0.77460126S RRNAG457G458G459A460A461G462*C516A517G518A519A520C521cWWntSHcWW
2 IL_4A1B_0374A1B0.22611126S RRNAG858U859G860A861A862G863*U880G881G882A883A884C886cWWntSHtHStHScWW
3 IL_1FJG_0531FJG0.00000A SSU rRNAA1329U1330G1331A1332A1333G1334*C1303G1304G1305A1306U1307U1308cWWcwWtSHtHStHScWW
4 IL_2AW7_0592AW70.13600A16S ribosomal RNAA1329U1330G1331A1332A1333G1334*C1303G1304G1305A1306U1307U1308cWWcwWtSHntHStHScWW
5 IL_4BPP_0784BPP0.19570A18S RRNAU1538U1539G1540A1541A1542C1543*G1512G1513G1514A1515U1516A1517cWWcwWtSHntHStHScWW
6 IL_3U5F_0793U5F0.21940618S rRNAU1566U1567C1568A1569A1570C1571*G1540G1541G1542A1543U1544A1545cWWcwWtHStHScWW
7 IL_3U5H_0273U5H0.26760525S rRNAC758U759G760A761U762G763*C768G769G770A771U772G773cWWcwWtSHntHStHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUGAAG*CGGAUU2
GGGAAG*CAGAAC1
GUGAAG*UGGAAGC1
UUGAAC*GGGAUA1
UUCAAC*GGGAUA1
CUGAUG*CGGAUG1
Non-Watson-Crick part of the motif
SequenceCounts
UGAA*GGAU3
GGAA*AGAA1
UGAA*GGAAG1
UCAA*GGAU1
UGAU*GGAU1

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_92321.4Only in the parent motif
IL_92321.3
Compare
IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4A1B_017, IL_3U5H_027, IL_1FJG_053IL_4BPP_078IL_2XZM_080

Children motifs

Child motifCommon motif instancesOnly in IL_92321.4Only in the child motif
IL_21761.1
Compare
IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4BPP_078, IL_4A1B_017, IL_3U5H_027, IL_1FJG_053IL_4CUX_035, IL_4CUX_093, IL_4CUV_031, IL_4CUV_132
Annotations
  • (7)
  • Basepair signature
    cWW-cWW-tSH-tHS-tHS-cWW
    Heat map statistics
    Min 0.14 | Avg 0.35 | Max 0.86
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