Motif IL_21761.1 Version IL_21761.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_132 | 4CUV | 0.9266 | 0 | 1 | 25S RRNA | C | 3161 | C | 3162 | A | 3163 | C | 3164 | A | 3165 | C | 3166 | * | G | 3284 | C | 3285 | G | 3286 | U | 3287 | G | 3288 | G | 3289 | cWW | ncWW | cWW | cWW | ||
| 2 | IL_4CUX_093 | 4CUX | 0.4299 | 0 | 2 | 18S RRNA | G | 1718 | A | 1719 | G | 1720 | A | 1721 | A | 1722 | U | 1723 | * | A | 1678 | G | 1679 | G | 1680 | A | 1681 | U | 1682 | C | 1683 | ntHS | tHS | cWW | |||
| 3 | IL_3U5H_027 | 3U5H | 0.2676 | 0 | 5 | 25S rRNA | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | cWW | cwW | tSH | ntHS | tHS | cWW |
| 4 | IL_4CUV_031 | 4CUV | 0.2400 | 0 | 1 | 25S RRNA | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | cWW | ncwW | tSH | ntHS | ntHS | cWW |
| 5 | IL_3U5F_079 | 3U5F | 0.2194 | 0 | 6 | 18S rRNA | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | * | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | cWW | cwW | tHS | tHS | cWW | |
| 6 | IL_4BPP_078 | 4BPP | 0.1957 | 0 | A | 18S RRNA | U | 1538 | U | 1539 | G | 1540 | A | 1541 | A | 1542 | C | 1543 | * | G | 1512 | G | 1513 | G | 1514 | A | 1515 | U | 1516 | A | 1517 | cWW | cwW | tSH | ntHS | tHS | cWW |
| 7 | IL_2AW7_059 | 2AW7 | 0.1360 | 0 | A | 16S ribosomal RNA | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | * | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | cWW | cwW | tSH | ntHS | tHS | cWW |
| 8 | IL_1FJG_053 | 1FJG | 0.0000 | 0 | A | SSU rRNA | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | * | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | cWW | cwW | tSH | tHS | tHS | cWW |
| 9 | IL_4A1B_037 | 4A1B | 0.2261 | 1 | 1 | 26S RRNA | G | 858 | U | 859 | G | 860 | A | 861 | A | 862 | G | 863 | * | U | 880 | G | 881 | G | 882 | A | 883 | A | 884 | C | 886 | cWW | ntSH | tHS | tHS | cWW | |
| 10 | IL_4CUX_035 | 4CUX | 0.7695 | 0 | 2 | 18S RRNA | A | 967 | U | 968 | C | 969 | A | 970 | A | 971 | G | 972 | * | C | 627 | G | 628 | U | 629 | A | 630 | G | 631 | U | 632 | cWW | ntHS | ||||
| 11 | IL_4A1B_017 | 4A1B | 0.7746 | 0 | 1 | 26S RRNA | G | 457 | G | 458 | G | 459 | A | 460 | A | 461 | G | 462 | * | C | 516 | A | 517 | G | 518 | A | 519 | A | 520 | C | 521 | cWW | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAUG*CGGAUG | 2 |
| AUGAAG*CGGAUU | 2 |
| CCACAC*GCGUGG | 1 |
| AGGAUC*GAGAAU | 1 |
| UUCAAC*GGGAUA | 1 |
| UUGAAC*GGGAUA | 1 |
| GUGAAG*UGGAAGC | 1 |
| CGUAGU*AUCAAG | 1 |
| GGGAAG*CAGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAA*GGAU | 3 |
| UGAU*GGAU | 2 |
| CACA*CGUG | 1 |
| GGAU*AGAA | 1 |
| UCAA*GGAU | 1 |
| UGAA*GGAAG | 1 |
| GUAG*UCAA | 1 |
| GGAA*AGAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_21761.1 | Only in the parent motif |
|---|---|---|---|
| IL_92321.4 Compare | IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4BPP_078, IL_4A1B_017, IL_3U5H_027, IL_1FJG_053 | IL_4CUX_035, IL_4CUX_093, IL_4CUV_031, IL_4CUV_132 |
Children motifs
| Child motif | Common motif instances | Only in IL_21761.1 | Only in the child motif |
|---|---|---|---|
| IL_58261.1 Compare | IL_4CUX_093, IL_4CUV_031, IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4BPP_078, IL_3U5H_027, IL_1FJG_053, IL_4CUV_132 | IL_4A1B_017, IL_4CUX_035 | IL_1VX6_007, IL_3U5H_127, IL_1VWW_007, IL_3J7A_068, IL_1VWW_141 |
| IL_65542.1 Compare | IL_4A1B_017, IL_4CUX_035 | IL_4CUX_093, IL_4CUV_031, IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4BPP_078, IL_3U5H_027, IL_1FJG_053, IL_4CUV_132 | IL_2PXV_002, IL_1VWW_084, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_1VX2_032, IL_2XXA_015, IL_1MFQ_007 |
- Annotations
-
- (11)
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.51 | Max 0.99
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