RNA 3D Hub //

Motif IL_97217.1 Version IL_97217.1 of this group appears in releases 0.6 to 0.6

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-32-43-4
1 IL_3U5H_0943U5H0.71472 525S rRNAG2276C2277*G2307U2310cWWcWW
2 IL_2ZJR_0152ZJR0.72141 X LSU rRNAC710C711*G776G778cWWcWW
3 IL_3U5F_0583U5F0.67861 618S rRNAG1146A1147*U1630C1632cWWcWW
4 IL_3U5H_0503U5H0.68311 525S rRNAG1083A1084*U1074C1076cWWcWW
5 IL_4A1B_1004A1B0.65091 126S RRNAA2557U2558*A2561U2563cWWcWW
6 IL_3SNP_0013SNP0.63871 Cferritin H IRE RNAA24C25*G7U9cWWcWW
7 IL_4A1B_1014A1B0.65491 126S RRNAG2603U2604*A2614U2616cWWcWW
8 IL_3U5H_0923U5H0.71892 525S rRNAU2200G2201*U2241A2244cWWcWW
9 IL_3U5H_0653U5H0.72051 525S rRNAC1411G1412*U1398G1400cWWcWW
10 IL_4A1B_0364A1B0.78351 126S RRNAA853U854*A920U922cWWcWW
11 IL_3D0U_0053D0U0.74791Single bulged GALysine Riboswitch RNAC81G82*U106G108cWWcWW
12 IL_1S72_0141S720.55481 0 LSU rRNAG322C323*G307C309cWWcWW
13 IL_1S03_0061S030.52561Single bulged CB47-MERC39C40*G9G11cWWcWW
14 IL_1NBS_0091NBS0.58592Major groove outside cWW, minor groove, intercalation pocketB RNase P class BU181G182*U228A231cWWcWW
15 IL_2AW7_0432AW70.50081 A16S ribosomal RNAU1390U1391*G925G927cWWcWW
16 IL_2XZM_0652XZM0.51361 A18S RRNAC1411C1412*G1240G1242cWWcWW
17 IL_1I9X_0021I9X0.51591Single bulged AA+BRNA (13-mer)U9A10*U4A6cWWcWW
18 IL_3U5H_0773U5H0.48481 525S rRNAC1669C1670*G1778G1780cWWcWW
19 IL_4A1B_0844A1B0.48001 126S RRNAC2124C2125*G2318G2320cWWcWW
20 IL_397D_001397D0.50453Multiple bulged basesB+ARNA (12-mer)C39U40*A22G26cWWcWW
21 IL_1DUQ_0041DUQ0.45681 C+DTHE REV BINDING ELEMENTG208C209*G220C222cWWcWW
22 IL_4A1B_0104A1B0.46842 126S RRNAC177U178*A240G243cWWcWW
23 IL_3D2V_0043D2V0.51631 BTPP riboswitch (THI element)C5C6*G73G75cWWcWW
24 IL_3U5H_1313U5H0.57371 525S rRNAC3193C3194*G3197G3199cWWcWW
25 IL_2VPL_0022VPL0.52131Single bulged ABFRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITEU16C17*G28A30cWWcWW
26 IL_1FUF_0021FUF0.52832Multiple bulged basesB+ARNA (14-mer)G23G24*U5C8cWWcWW
27 IL_3OWZ_0053OWZ0.53531 BDomain II of glycine riboswitchU27C28*G12A14cWWcWW
28 IL_1S72_0021S720.55441 0 LSU rRNAG33C34*G448C450cWWcWW
29 IL_1DUQ_0061DUQ0.54081 E+FTHE REV BINDING ELEMENTG308C309*G320C322cWWcWW
30 IL_3UXR_0193UXR0.61161 A23S ribosomal RNAC697C698*G763G765cWWcWW
31 IL_3UXR_0333UXR0.46721 A23S ribosomal RNAG880G881*U895C897cWWcWW
32 IL_2PJP_0012PJP0.53271Single bulged UBSECIS RNAA29C30*G16U18cWWcWW
33 IL_2OIU_0032OIU0.52961Single bulged UQL1 Ribozyme RNA LigaseA41C42*G18U20cWWcWW
34 IL_4A1B_0954A1B0.56491 126S RRNAA2799C2800*G2404U2406cWWcWW
35 IL_3UXR_0023UXR0.55981 A23S ribosomal RNAG36C37*G442C444cWWcWW
36 IL_1S03_0011S030.58241Single bulged UA47-MERC41U42*A6G8cWWcWW
37 IL_2XXA_0102XXA0.67371 G SSRP RNAG17C18*G82C84cWWcWW
38 IL_2AW7_0482AW70.50111 A16S ribosomal RNAC1208C1209*G1048G1050cWWcWW
39 IL_3U5F_0163U5F0.54191 618S rRNAA288U289*A265U267cWWcWW
40 IL_2C4Z_0022C4Z0.52691 SRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
41 IL_1U63_0021U630.52091 B49 NT FRAGMENT OF MRNA FOR L1U16C17*G28A30cWWcWW
42 IL_2XZM_0742XZM0.57731 A18S RRNAU1322C1323*G1343A1345cWWcWW
43 IL_3DIR_0053DIR0.52891 ARNA (174-MER)G84G85*U109C111cWWcWW
44 IL_2BQ5_0022BQ50.59301 SRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
45 IL_2QBG_0802QBG0.55901 B23S rRNAC2442C2443*G2067G2069cWWcWW
46 IL_2XZM_0132XZM0.50591 A18S RRNAC192C193*G181G183cWWcWW
47 IL_1S72_1041S720.46401 9 5S rRNAC95C96*G86G88cWWcWW
48 IL_4A1B_0114A1B0.47191 126S RRNAA204C205*G189U191cWWcWW
49 IL_2QBG_0072QBG0.46591 B23S rRNAG36C37*G442C444cWWcWW
50 IL_3U5H_0893U5H0.48791 525S rRNAC2128U2129*G2323G2325cWWcWW
51 IL_3U5F_0093U5F0.46252 618S rRNAA300A301*U113U116cWWcWW
52 IL_2ZJR_0562ZJR0.46471 X LSU rRNAA1534C1535*G1488U1490cWWcWW
53 IL_2OIU_0012OIU0.52941 PL1 Ribozyme RNA LigaseA41C42*G18U20cWWcWW
54 IL_2AW7_0512AW70.50561 A16S ribosomal RNAU1060G1061*C1195A1197cWWcWW
55 IL_1S03_0021S030.52141Single bulged CA47-MERC39C40*G9G11cWWcWW
56 IL_3GX5_0013GX50.43851 ARNA (94-MER)C40C41*G13G15cWWcWW
57 IL_1NBS_0051NBS0.42501Single bulged AB RNase P class BG113C114*G129C131cWWcWW
58 IL_2C50_0012C500.41771 RRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
59 IL_2ZY6_0022ZY60.44121Single bulged UAphenylalanyl transfer RNAC24C25*G10G12cWWcWW
60 IL_2AW7_0012AW70.50011 A16S ribosomal RNAU552A553*U30A32cWWcWW
61 IL_3U5H_0263U5H0.48431 525S rRNAA755U756*A775U777cWWcWW
62 IL_3U5H_1053U5H0.47111 525S rRNAA2740C2741*G2714U2716cWWcWW
63 IL_4A1C_0034A1C0.42561 35S RRNAU15A16*U62A64cWWcWW
64 IL_4A1B_0444A1B0.62071 126S RRNAA1126U1127*A1009U1011cWWcWW
65 IL_4A1B_0234A1B0.56291 126S RRNAG493G494*U484C486cWWcWW
66 IL_1S72_0401S720.55891 0 LSU rRNAC1253C1254*G1108G1110cWWcWW
67 IL_3U5H_1433U5H0.49791 75S rRNAC15U16*A63G65cWWcWW
68 IL_4A1B_1234A1B0.56841 126S RRNAU3247C3248*G3144G3146cWWcWW
69 IL_1S72_0301S720.55881 0 LSU rRNAC847C848*G834G836cWWcWW
70 IL_3U5H_1293U5H0.49251 525S rRNAA3210C3211*G3177U3179cWWcWW
71 IL_2NOK_0032NOK0.39761 A+BRNA (24-mer) + RNA (20-mer)U61C62*G105G107cWWcWW
72 IL_1GID_0091GID0.43391 BP4-P6 RNA RIBOZYME DOMAING110G111*C209C211cWWcWW
73 IL_2PLY_0012PLY0.44251 CRNA (23-mer)C21G22*C25G27cWWcWW
74 IL_1DUQ_0081DUQ0.45791 G+HTHE REV BINDING ELEMENTG408C409*G420C422cWWcWW
75 IL_2XZM_0092XZM0.36382 A18S RRNAA291G292*U109U112cWWcWW
76 IL_2IZN_0022IZN0.38951 SRNA (19-mer)G14||||P_1G15||||P_1*C5||||P_1C7||||P_1cWWcWW
77 IL_3DHS_0033DHS0.38611 ARNase P RNAC77C78*G66G68cWWcWW
78 IL_3DIR_0013DIR0.37471 ARNA (174-MER)C78C79*G12G14cWWcWW
79 IL_1S72_0741S720.32591 0 LSU rRNAC2477U2478*A2108G2110cWWcWW
80 IL_3U5H_1033U5H0.35571 525S rRNAG2614G2615*C2625C2627cWWcWW
81 IL_3U5F_0563U5F0.31111 618S rRNAC1066C1067*G1051G1053cWWcWW
82 IL_1S72_0771S720.32831 0 LSU rRNAG2279A2280*U2290C2292cWWcWW
83 IL_2ZJR_0312ZJR0.33241 X LSU rRNAU1170A1171*U1005A1007cWWcWWncWH
84 IL_3U5F_0693U5F0.31541 618S rRNAC1280G1281*C1426G1428cWWcWW
85 IL_4A1B_0764A1B0.34621 126S RRNAC1733A1734*U1758G1760cWWcWW
86 IL_2AW7_0192AW70.36101 A16S ribosomal RNAU375G376*U387A389cWWcWW
87 IL_3U5F_0263U5F0.55051 618S rRNAA481U482*A505U507cWWcWWncSW
88 IL_1U9S_0011U9S0.53131Single bulged AARIBONUCLEASE PG95C96*G107C109cWWcWW
89 IL_2XZM_0302XZM0.50881 A18S RRNAA579G580*C552U554cWWcWW
90 IL_2BQ5_0012BQ50.45131 RRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
91 IL_4A1B_0564A1B0.47551 126S RRNAU1351U1352*A1207G1209cWWcWW
92 IL_2ZJR_0022ZJR0.46461 X LSU rRNAG36C37*G454C456cWWcWW
93 IL_6MSF_0016MSF0.45951Single bulged ARRNA (14-mer)G12||||P_1G13||||P_1*C2||||P_1C4||||P_1cWWcWW
94 IL_4A1B_0064A1B0.46811 126S RRNAG158G159*U260C262cWWcWW
95 IL_3D2V_0013D2V0.51591Single bulged UATPP riboswitch (THI element)C5C6*G73G75cWWcWW
96 IL_2BU1_0012BU10.41481 RRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
97 IL_1NBS_0011NBS0.42101 A RNase P class BG113C114*G129C131cWWcWW
98 IL_3U5H_1403U5H0.49751 525S rRNAU3363C3364*G3340A3342cWWcWW
99 IL_1GID_0021GID0.43371 AP4-P6 RNA RIBOZYME DOMAING110G111*C209C211cWWcWW
100 IL_2ZJR_0762ZJR0.46481 X LSU rRNAC2421C2422*G2050G2052cWWcWW
101 IL_3U5H_0023U5H0.48351 5+825S rRNA + 5.8S rRNAC7C8*G150G152cWWcWW
102 IL_1DUQ_0021DUQ0.53611Single bulged AA+BTHE REV BINDING ELEMENTG108C109*G120C122cWWcWW
103 IL_1S03_0051S030.52461Single bulged UB47-MERC41U42*A6G8cWWcWW
104 IL_3U5H_0393U5H0.79251 525S rRNAA1099U1100*A983U985cWWcWW
105 IL_3UXR_0203UXR0.75611 A23S ribosomal RNAG702U703*G728C730cWWcWW
106 IL_3UXR_0383UXR0.78191 A23S ribosomal RNAG1149C1150*G1011C1013cWWcWW
107 IL_3UXR_1043UXR0.72971 A23S ribosomal RNAG2838G2839*U2878C2880cWWcWW
108 IL_4A1B_1244A1B0.63201 126S RRNAU3179C3180*G3158A3160cWWcWW
109 IL_2ZJR_0342ZJR0.72901 X LSU rRNAC1160U1161*A1022G1024cWWcWW
110 IL_3U5H_0303U5H0.71961 525S rRNAA828U829*A895U897cWWcWW
111 IL_1MJI_0031MJI0.68642Multiple bulged basesD5S rRNA fragmentC30C31*G51G54cWWcWW
112 IL_2ZJR_0722ZJR0.71842 X LSU rRNAG1916C1917*G1947C1950cWWcWW
113 IL_2QBG_0232QBG0.63951 B23S rRNAU702U703*G728A730cWWcWW
114 IL_1MJI_0011MJI0.68572 C5S rRNA fragmentC30C31*G51G54cWWcWW
115 IL_3U5H_0143U5H0.66821 8+55.8S rRNAG25U26*G337C339cWWcWW
116 IL_2QBG_0702QBG0.74951 B23S rRNAG1770C1771*G1980U1982cWWcWW
117 IL_2ZJR_0652ZJR0.75591 X LSU rRNAG1761C1762*G1963U1965cWWcWW
118 IL_3SD3_0023SD30.75591 ATetrahydrofolate riboswitchG17C18*G67U69cWWcWW
119 IL_1S72_0671S720.71972 0 LSU rRNAU1897G1898*U1939A1942cWWcWW
120 IL_3U5H_0553U5H0.74621 525S rRNAU1324U1325*A1180A1182cWWcWW
121 IL_3UXR_0563UXR0.74221 A23S ribosomal RNAC1450|||AC1451*G1459G1461cWWcWW
122 IL_2QBG_0762QBG0.69262 B23S rRNAG1933C1934*G1964C1967cWWcWW
123 IL_1CSL_0021CSL0.58401Single bulged AA+BRNA (13-mer) + RNA (15-mer)G50C51*G67C69cWWcWW
124 IL_2VPL_0052VPL0.57831 DFRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITEU16C17*G28A30cWWcWW
125 IL_2QBG_1042QBG0.61052 B23S rRNAU2695U2696*A2711G2714cWWcWW
126 IL_4A1B_1214A1B0.56752 126S RRNAU3052U3053*A3066G3069cWWcWW
127 IL_3OWZ_0013OWZ0.59421 ADomain II of glycine riboswitchU27C28*G12A14cWWcWW
128 IL_3UXR_0663UXR0.61521 A23S ribosomal RNAG1770C1771*G1980C1982cWWcWW
129 IL_2A64_0022A640.58261Single bulged UAribonuclease P RNAG395C396*G51C53cWWcWW
130 IL_2AW7_0422AW70.63541 A16S ribosomal RNAG922A923*U1393C1395cWWcWW
131 IL_2XXA_0052XXA0.85091 F SSRP RNAA26C27*G71U73cWWcWW
132 IL_3IVK_0033IVK0.85041 Cclass I ligase productA112C113*G46U48cWWcWW
133 IL_3R2D_0013R2D0.83502 S+RRNA (12-mer)G10C11*G2C5cWWcWW
134 IL_3UXR_0453UXR0.81991 A23S ribosomal RNAG1229C1230*G1219C1221cWWcWW
135 IL_1GID_0121GID0.81741 BP4-P6 RNA RIBOZYME DOMAINA192C193*G129U131cWWcWW
136 IL_1S72_0271S720.74861 0 LSU rRNAA793U794*A819U821cWWcWW
137 IL_4A1B_0914A1B0.70712 126S RRNAG2271C2272*G2302U2305cWWcWW
138 IL_2QBG_0382QBG0.78071 B23S rRNAG1149C1150*G1011C1013cWWcWW
139 IL_3U5H_1363U5H0.76831 525S rRNAU3387C3388*G3318A3320cWWcWW
140 IL_3SUX_0013SUX0.75081Single bulged GX THF riboswitchG20C21*G76U78cWWcWW
141 IL_3P49_0033P490.74751 AGlycine riboswitchA30C31*G13U15cWWcWW
142 IL_3UXR_0733UXR0.70392 A23S ribosomal RNAG1933C1934*G1964C1967cWWcWW
143 IL_1S72_0261S720.77861 0 LSU rRNAA788C789*G856U858cWWcWW
144 IL_1U9S_0061U9S0.72081Single bulged GARIBONUCLEASE PG140G141*U158C160cWWcWW
145 IL_1FJG_0021FJG0.73311 A SSU rRNAG44U45*G396C398cWWcWW
146 IL_2ZJR_0162ZJR0.73601 X LSU rRNAU715U716*G741A743cWWcWW
147 IL_3U5F_0183U5F0.76171 618S rRNAC275C276*G279G281cWWcWW
148 IL_2XXA_0122XXA0.82951 G SSRP RNAA26C27*G71U73cWWcWW
149 IL_3U5H_1523U5H0.68341 85.8S rRNAG68U69*A89C91cWWcWW
150 IL_2XXA_0032XXA0.67061 F SSRP RNAG17C18*G82C84cWWcWW
151 IL_1FUF_0031FUF0.63732Multiple bulged basesA+BRNA (14-mer)G9G10*U19C22cWWcWW
152 IL_2IZM_0022IZM0.53231 SRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
153 IL_2XZM_0572XZM0.51191 A18S RRNAU1599U1600*G1122A1124cWWcWW
154 IL_2XZM_0232XZM0.50781 A18S RRNAU439C440*G450A452cWWcWW
155 IL_3SNP_0033SNP0.58831Single bulged CDferritin H IRE RNAA24C25*G7U9cWWcWW
156 IL_4A1B_0514A1B0.56352 126S RRNAG1111A1112*U1101C1104cWWcWW
157 IL_2QBG_0692QBG0.60761 B23S rRNAC1727C1728*G1731G1733cWWcWW
158 IL_2XZM_0562XZM0.64581 A18S RRNAG1119A1120*U1602C1604cWWcWW
159 IL_3IVK_0013IVK0.61071Single bulged CMclass I ligase productA112C113*G46U48cWWcWW
160 IL_2ZJR_0112ZJR0.60721 X LSU rRNAG678C679*G600C602cWWcWW
161 IL_4A1C_0024A1C0.58751 25.8S RRNAG71C72*G90C92cWWcWW
162 IL_3U5H_1423U5H0.63242 525S rRNAC3349C3350*G3353G3356cWWcWW
163 IL_3U5F_0313U5F0.60071 618S rRNAG586C587*G557C559cWWcWW
164 IL_3UXR_0773UXR0.56131 A23S ribosomal RNAC2442C2443*G2067G2069cWWcWW
165 IL_3U5F_0593U5F0.55421 618S rRNAU1627U1628*G1149A1151cWWcWW
166 IL_3D0U_0013D0U0.53131Single bulged CALysine Riboswitch RNAC75C76*G9G11cWWcWW
167 IL_2XZM_0292XZM0.74661 A18S RRNAG580C581*G550C552cWWcWW
168 IL_1FJG_0351FJG0.80291 A SSU rRNAG922A923*U1393C1395cWWcWW
169 IL_2QBG_1072QBG0.78571 B23S rRNAG2838G2839*U2878C2880cWWcWW
170 IL_3U5H_0033U5H0.56951 8+55.8S rRNAG144U145*A13C15cWWcWW
171 IL_3U5H_0983U5H0.57011 525S rRNAA2811C2812*G2409U2411cWWcWW
172 IL_1ET4_0041ET40.53081 BRNA APTAMER, 35-MERC318C319*G326G328cWWcWW
173 IL_3U5H_0933U5H0.49211 525S rRNAC2237G2238*C2204G2206cWWcWW
174 IL_3U5H_1253U5H0.57142 525S rRNAC3063U3064*A3077G3080cWWcWW
175 IL_2BU1_0022BU10.53111 SRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
176 IL_2QBG_0732QBG0.60982 B23S rRNAU1841G1842*U1898A1901cWWcWW
177 IL_4A1B_1314A1B0.48071 126S RRNAC3320U3321*A3297G3299cWWcWW
178 IL_3U5H_0133U5H0.48401 525S rRNAA204C205*G189U191cWWcWW
179 IL_4A1B_0724A1B0.47761 126S RRNAU1693C1694*G1804G1806cWWcWW
180 IL_3IWN_0043IWN0.29922Multiple bulged basesAC-di-GMP riboswitchG46G47*U76C79cWWcWW
181 IL_1I9X_0011I9X0.36721Single bulged AB+ARNA (13-mer)U9A10*U4A6cWWcWW
182 IL_2ZJR_0932ZJR0.33281 X LSU rRNAC2570G2571*C2580G2582cWWcWW
183 IL_3U5H_0583U5H0.35501 525S rRNAC1296C1297*G1207G1209cWWcWW
184 IL_4A1B_0314A1B0.33941 126S RRNAC776C777*G804G806cWWcWW
185 IL_2IZM_0012IZM0.43831 RRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
186 IL_1FJG_0361FJG0.37831 A SSU rRNAU1390U1391*G925G927cWWcWW
187 IL_1R3E_0021R3E0.40733Multiple bulged basesD+ERNA (17-mer)C415C416*G408G412cWWcWW
188 IL_1F7Y_0021F7Y0.40031 B16S RIBOSOMAL RNA FRAGMENTG21G22*C46C48cWWcWW
189 IL_2XZM_0682XZM0.51441 A18S RRNAC1252G1253*C1397G1399cWWcWW
190 IL_3SN2_0013SN20.44861Single bulged CBtransferrin receptor iron regulatory element B RNAC24A25*U7G9cWWcWW
191 IL_2PLY_0022PLY0.44651 ERNA (23-mer)C21G22*C25G27cWWcWW
192 IL_1R3E_0011R3E0.40463Multiple bulged basesE+DRNA (17-mer)C415C416*G408G412cWWcWW
193 IL_2IZN_0012IZN0.38861Single bulged GRRNA (19-mer)G14||||P_1G15||||P_1*C5||||P_1C7||||P_1cWWcWW
194 IL_1S72_0101S720.31691 0 LSU rRNAG274G275*U374C376cWWcWW
195 IL_3U5H_0253U5H0.35101 525S rRNAC752C753*G779G781cWWcWW
196 IL_3UCZ_0023UCZ0.30301 RRNA (92-MER)G86G87*C52C54cWWcWW
197 IL_2QBG_0352QBG0.22841 B23S rRNAU1159G1160*C994A996cWWcWW
198 IL_1FJG_0161FJG0.17181 A SSU rRNAU375G376*U387A389cWWcWW
199 IL_3Q1Q_0043Q1Q0.15062 BRNase P RNAG108G109*C205C208cWWcWW
200 IL_2QUX_0032QUX0.08811 IRNA (25-MER)C20G21*C5G7cWWcWW
201 IL_1S72_0701S720.00002 0 LSU rRNAG1974C1975*G2005U2008cWWcWW
202 IL_3U5F_0243U5F0.19901 618S rRNAU463A464*U439A441cWWcWW
203 IL_1FJG_0071FJG0.26532 A SSU rRNAG231G232*U129C131cWWcWW
204 IL_1FJG_0141FJG0.26851 A SSU rRNAG392A393*U367C369cWWcWW
205 IL_3B31_0013B310.29951 ARNA (29-MER)C6194G6195*C6181G6183cWWcWW
206 IL_2QUX_0012QUX0.24601 CRNA (25-MER)C20G21*C5G7cWWcWW
207 IL_1U9S_0031U9S0.20302Major groove outside cWW, minor groove, intercalation pocketARIBONUCLEASE PU116G117*C224A227cWWcWW
208 IL_2ZJR_0682ZJR0.20032 X LSU rRNAU1833G1834*U1881A1884cWWcWW
209 IL_2AW7_0022AW70.23821 A16S ribosomal RNAA44G45*C396U398cWWcWW
210 IL_2QUX_0022QUX0.25561Single bulged AFRNA (25-MER)C20G21*C5G7cWWcWW
211 IL_2XZM_0212XZM0.24861 A18S RRNAC455A456*U431G433cWWcWW
212 IL_1NBS_0021NBS0.29692 A RNase P class BU181G182*U228A231cWWcWW
213 IL_2QUX_0052QUX0.26031 ORNA (25-MER)C20G21*C5G7cWWcWW
214 IL_1JZV_0051JZV0.21771 C+DRNA (8-mer) + RNA (9-mer)G24A25*U32C34cWWcWW
215 IL_2QUX_0062QUX0.26321 RRNA (25-MER)C20G21*C5G7cWWcWW
216 IL_3IWN_0033IWN0.22021Single bulged UAC-di-GMP riboswitchG81G82*C42C44cWWcWW
217 IL_4A1B_0884A1B0.23201 126S RRNAC2232G2233*C2199G2201cWWcWW
218 IL_3UXR_0353UXR0.23171 A23S ribosomal RNAU1159G1160*C994A996cWWcWW
219 IL_1S72_0961S720.22271 0 LSU rRNAG2860G2861*C2895C2897cWWcWW
220 IL_1JZV_0021JZV0.21611Single bulged AA+BRNA (8-mer) + RNA (9-mer)G4A5*U12C14cWWcWW
221 IL_1MFQ_0051MFQ0.22041Single bulged AA SRP RNAC220C221*G175G177cWWcWW
222 IL_2AW7_0172AW70.24161 A16S ribosomal RNAC392A393*U367G369cWWcWW
223 IL_2C4Z_0012C4Z0.24461 RRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
224 IL_1X8W_0011X8W0.27871 ATetrahymena ribozyme RNAG110G111*C209C211cWWcWW
225 IL_1GID_0051GID0.29881 AP4-P6 RNA RIBOZYME DOMAINA192C193*G129U131cWWcWW
226 IL_3G78_0043G780.27591 AGroup II catalytic intron D1-D4-1A99A100*U82U84cWWcWW
227 IL_2IZ9_0022IZ90.28761 SRNA (18-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
228 IL_1FJG_0401FJG0.27261 A SSU rRNAC1208C1209*G1048G1050cWWcWW
229 IL_2NOK_0062NOK0.28371 C+DRNA (24-mer) + RNA (20-mer)U61C62*G105G107cWWcWW
230 IL_2QUX_0042QUX0.25731 LRNA (25-MER)C20G21*C5G7cWWcWW
231 IL_3UCZ_0033UCZ0.30802 RRNA (92-MER)G56G57*U81C84cWWcWW
232 IL_2PN4_0032PN40.39121 A+BRNA (24-mer) + RNA (20-mer)U61C62*G105G107cWWcWW
233 IL_2XZM_0242XZM0.36461 A18S RRNAA473G474*C498U500cWWcWW
234 IL_1S72_0881S720.32951 0 LSU rRNAC2626G2627*C2636G2638cWWcWW
235 IL_4A1B_1164A1B0.34891 126S RRNAC2948G2949*C2958G2960cWWcWW
236 IL_3U5H_0343U5H0.35411 525S rRNAC886G887*C873G875cWWcWW
237 IL_2QBG_0992QBG0.33851 B23S rRNAC2591G2592*C2601G2603cWWcWW
238 IL_1U63_0041U630.36721Single bulged AD49 NT FRAGMENT OF MRNA FOR L1U16C17*G28A30cWWcWW
239 IL_2A64_0032A640.37811Single bulged UAribonuclease P RNAC77C78*G66G68cWWcWW
240 IL_3MEI_0013MEI0.36461Single bulged UA+BRNA (23-mer)C7G8*C15G17cWWcWW
241 IL_3DHS_0023DHS0.38241 ARNase P RNAG395C396*G51C53cWWcWW
242 IL_4A1B_0394A1B0.34091 126S RRNAC911G912*C898G900cWWcWW
243 IL_2PN4_0082PN40.39621 C+DRNA (24-mer) + RNA (20-mer)U61C62*G105G107cWWcWW
244 IL_2C50_0022C500.41791 SRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
245 IL_3U5H_1193U5H0.35781 525S rRNAC2960G2961*C2970G2972cWWcWW
246 IL_1ET4_0081ET40.38691 DRNA APTAMER, 35-MERC518C519*G526G528cWWcWW
247 IL_4A1B_1054A1B0.34671 126S RRNAA2774G2775*C2760U2762cWWcWW
248 IL_4A1B_0504A1B0.34341 126S RRNAU1117C1118*G1094G1096cWWcWW
249 IL_4A1B_0594A1B0.34571 126S RRNAC1323C1324*G1234G1236cWWcWW
250 IL_2IZ9_0012IZ90.28731 RRNA (18-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
251 IL_1ET4_0021ET40.20091Single bulged UARNA APTAMER, 35-MERC218C219*G226G228cWWcWW
252 IL_1FJG_0431FJG0.17731 A SSU rRNAC1060G1061*C1195G1197cWWcWW
253 IL_2QBG_0892QBG0.33631 B23S rRNAG2414G2415*U2401C2403cWWcWW
254 IL_3U5F_0013U5F0.30831 618S rRNAU600A601*U24A26cWWcWW
255 IL_1DQH_0011DQH0.28041Single bulged CA+BRNA (9-mer) + RNA (10-mer)C3A4*U15G17cWWcWW
256 IL_1S72_0641S720.32311 0 LSU rRNAC1826G1827*C2021G2023cWWcWW
257 IL_2AW7_0262AW70.36311 A16S ribosomal RNAC470U471*A460G462cWWcWW
258 IL_1FJG_0011FJG0.26521 A SSU rRNAU552A553*U30A32cWWcWW
259 IL_2AW7_0082AW70.36081 A16S ribosomal RNAG75G76*U93C95cWWcWW
260 IL_3U5F_0663U5F0.46361 618S rRNAC1440C1441*G1268G1270cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CC*GUG21
CC*GAG18
CG*CAG15
GC*GAC14
CC*GCG9
AC*GUU9
GA*UAC8
CG*CUG8
AC*GCU7
UC*GAA7
GC*GUC6
CU*AUG5
UC*GUG5
GG*CAC5
UG*UAAA4
AU*AAU4
GG*UGC4
AC*GAU4
GC*GCAU3
GUG*CC3
UA*UAA3
GG*UAC3
UC*GUA3
AU*AGU3
GG*CGC3
CA*UCG3
GC*GCAC3
UU*GGA3
AU*AUU2
UU*GGG2
GG*UUUC2
GC*GCC2
UA*UGA2
CU*AAG2
UA*UCA2
UG*UGA2
GG*UUC2
GUC*GC2
CC*GAAG2
GU*GAC2
GC*GAU2
GC*GGU2
GU*AUC2
UC*GCG2
GG*UAGC2
CC*GUUCG2
GG*CUC2
AG*CAU2
GU*AAU1
CG*UAG1
CG*UGG1
CU*AUCUG1
CU*AAGG1
CU*GAG1
AA*UCGU1
UG*CAA1
UAGU*AG1
CAU*AG1
UU*AUG1
GU*GGC1
GG*UCC1
UG*UCAA1
UU*AUA1
UU*ACUG1
UU*AAUG1
GC*GCUC1
GAC*GC1
GGA*UU1
UC*GGA1
GA*UUAC1
CC*GUUG1
CU*AUUG1
GG*CCC1
UG*CCA1
GG*CAAC1
UA*UUA1
GG*UGAC1
GA*UUC1
UG*CAAA1
UG*UGAA1
UUG*CA1
CCA*UG1
CA*UUG1
AA*UGU1
AG*CUU1
Non-Watson-Crick part of the motif
SequenceCounts
*A93
*U71
*C28
*G25
*AA8
*CA7
U*6
*UU4
*AG3
A*2
*CU2
*UUC2
*GA2
*UCU1
*CG1
AG*1
*AU1
G*1
*UA1
C*1

Release history

Release0.6
Date2012-04-02
StatusNew id, 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_97217.1Only in the parent motif
IL_61133.1
Compare		IL_2PN4_008, IL_1ET4_008, IL_2ZJR_011, IL_2PN4_003, IL_2ZJR_016, IL_2ZJR_015, IL_2AW7_051, IL_2C50_002, IL_1ET4_004, IL_2C50_001, IL_2XZM_030, IL_3D2V_004, IL_3D2V_001, IL_1S72_040, IL_1GID_002, IL_2ZJR_068, IL_2XXA_003, IL_2ZJR_065, IL_2XXA_005, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_1GID_009, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_1S72_030, IL_1S72_014, IL_2XZM_009, IL_2ZJR_093, IL_3B31_001, IL_2XXA_010, IL_2XXA_012, IL_2AW7_017, IL_2NOK_006, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_2ZJR_034, IL_1DUQ_006, IL_2ZJR_031, IL_2QBG_089, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_1S72_064, IL_1GID_012, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_1U9S_003, IL_1U9S_001, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_2OIU_003, IL_2OIU_001, IL_2AW7_008, IL_2C4Z_001, IL_2XZM_068, IL_2PJP_001, IL_1S72_074, IL_2AW7_001, IL_2AW7_002, IL_2QBG_073, IL_2QBG_023, IL_3OWZ_005, IL_3OWZ_001, IL_1S72_002, IL_2C4Z_002, IL_2BQ5_002, IL_2ZJR_056, IL_2BQ5_001, IL_2BU1_002, IL_2BU1_001, IL_1DUQ_002, IL_1DUQ_004, IL_1S72_077, IL_2XZM_074, IL_1DUQ_008, IL_2AW7_019, IL_2XZM_065, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_3D0U_005, IL_3D0U_001, IL_2IZN_002, IL_2IZN_001, IL_3IVK_001, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_2IZM_002, IL_1U63_004, IL_1MFQ_005, IL_1U63_002, IL_1X8W_001, IL_1FUF_002, IL_3G78_004, IL_1FJG_016, IL_1FJG_014, IL_1S72_096, IL_3DIR_001, IL_3DIR_005, IL_1S03_002, IL_1S03_001, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_1NBS_005, IL_1R3E_001, IL_1R3E_002, IL_3IVK_003, IL_2IZ9_001, IL_2IZ9_002, IL_2ZY6_002, IL_2QBG_070, IL_2XZM_056, IL_2XZM_057, IL_1FJG_007, IL_1FJG_001, IL_1FJG_002, IL_2XZM_013, IL_3MEI_001, IL_2VPL_005, IL_1S72_027, IL_1S72_026, IL_2VPL_002, IL_3P49_003, IL_1S72_067, IL_2XZM_021, IL_2AW7_048, IL_1DQH_001, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_1FJG_036, IL_2QUX_004, IL_2QUX_005, IL_2QUX_006, IL_1JZV_002, IL_1JZV_005, IL_2QUX_001, IL_2QUX_002, IL_2QUX_003, IL_2XZM_023, IL_2QBG_035, IL_1FUF_003, IL_2PLY_001, IL_2XZM_024, IL_2XZM_029, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_3DHS_002, IL_3DHS_003, IL_2ZJR_076IL_3UXR_002, IL_3SN2_001, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_3U5H_065, IL_3U5H_039, IL_3UXR_073, IL_3UXR_077, IL_3U5F_058, IL_3U5F_059, IL_3U5F_056, IL_4A1B_044, IL_3U5H_077, IL_1MJI_001, IL_4A1B_011, IL_4A1B_010, IL_3SNP_001, IL_3UXR_066, IL_3SNP_003, IL_4A1B_076, IL_3U5H_003, IL_3U5H_002, IL_4A1B_072, IL_3U5F_026, IL_3U5F_024, IL_3GX5_001, IL_3R2D_001, IL_3U5H_089, IL_3UXR_056, IL_3U5H_014, IL_1S72_070, IL_3U5H_013, IL_3U5H_152, IL_3U5F_031, IL_2QBG_076, IL_3U5H_094, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_3U5H_098, IL_4A1C_003, IL_4A1C_002, IL_3UXR_045, IL_3U5H_119, IL_3U5H_025, IL_1MJI_003, IL_3U5H_026, IL_3U5H_142, IL_3U5H_143, IL_3U5H_140, IL_3U5F_009, IL_3U5F_001, IL_3SD3_002, IL_3UXR_104, IL_3UXR_038, IL_3UXR_035, IL_3UXR_033, IL_3U5H_034, IL_3U5H_030, IL_4A1B_123, IL_3U5H_136, IL_4A1B_121, IL_3U5H_131, IL_4A1B_124, IL_3U5F_016, IL_3U5F_018, IL_4A1B_095, IL_4A1B_091, IL_4A1B_039, IL_4A1B_031, IL_3UXR_020, IL_4A1B_036, IL_3U5H_129, IL_4A1B_131, IL_397D_001, IL_3U5H_125, IL_3U5F_066, IL_3U5F_069, IL_4A1B_088, IL_4A1B_084, IL_3UXR_019, IL_4A1B_023, IL_4A1B_105, IL_3UCZ_002, IL_4A1B_101, IL_4A1B_100, IL_3U5H_050, IL_3U5H_055, IL_3U5H_058, IL_4A1B_006, IL_3UCZ_003, IL_2ZJR_072IL_387D_001, IL_3PYO_061, IL_3O30_022, IL_3O30_024, IL_3PYO_064, IL_3O58_087, IL_3O58_121, IL_3O30_065, IL_3O58_066, IL_3O58_160, IL_1XOK_002, IL_3O58_100, IL_1S72_086, IL_1ET4_010, IL_3O58_142, IL_2AW7_005, IL_3O30_068, IL_3O58_068, IL_1S72_042, IL_3G78_015, IL_2QBG_060, IL_3O30_026, IL_1S72_022, IL_3PYO_078, IL_3PYO_034, IL_3PYO_037, IL_3PYO_018, IL_3PYO_019, IL_2IPY_002, IL_2NZ4_007, IL_3PYO_072, IL_3PYO_095, IL_2IPY_005, IL_1KXK_003, IL_3O58_057, IL_3O58_133, IL_3O30_071, IL_3O30_010, IL_3PYO_088, IL_3O58_137, IL_3O58_051, IL_3O58_074, IL_3O58_076, IL_3O58_112, IL_1ET4_006, IL_1S72_099, IL_3O58_046, IL_1XOK_001, IL_1U9S_008, IL_1FJG_005, IL_3MUR_003, IL_3MUR_004, IL_3PYO_044, IL_2GIS_001, IL_3PYO_002, IL_3PYO_032, IL_3PYO_008, IL_3O58_017
IL_49994.1
Compare		IL_2QBG_076, IL_1MJI_001, IL_1MJI_003, IL_397D_001, IL_2ZJR_072, IL_1S72_070IL_2PN4_008, IL_3UXR_002, IL_1GID_009, IL_2ZJR_011, IL_3SN2_001, IL_2ZJR_016, IL_2ZJR_015, IL_2AW7_051, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3U5H_136, IL_4A1B_051, IL_4A1B_050, IL_2C50_002, IL_4A1B_056, IL_2C50_001, IL_2XZM_030, IL_3D2V_004, IL_2XZM_056, IL_3D2V_001, IL_2QBG_023, IL_4A1B_044, IL_3GX5_001, IL_3U5H_077, IL_2ZJR_068, IL_2XXA_003, IL_4A1B_088, IL_2ZJR_065, IL_2XXA_005, IL_2PN4_003, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_3UXR_073, IL_3UXR_077, IL_3U5F_058, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_4A1B_131, IL_1S72_030, IL_1S72_014, IL_2XZM_009, IL_2ZJR_093, IL_3B31_001, IL_2XXA_010, IL_2XXA_012, IL_1S72_002, IL_1DUQ_004, IL_2NOK_006, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_2ZJR_034, IL_1DUQ_006, IL_2ZJR_031, IL_2QBG_089, IL_3U5H_142, IL_3SNP_001, IL_3UXR_066, IL_3SNP_003, IL_1FJG_040, IL_2QBG_007, IL_4A1B_076, IL_3U5H_003, IL_3U5H_002, IL_1GID_012, IL_4A1B_072, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_3U5F_026, IL_3U5F_024, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_3U5H_089, IL_2OIU_003, IL_3U5H_065, IL_2OIU_001, IL_3UXR_056, IL_2AW7_008, IL_2C4Z_001, IL_2XZM_068, IL_3U5H_014, IL_2PJP_001, IL_2XZM_065, IL_2AW7_001, IL_3U5H_013, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_1S72_040, IL_3U5H_094, IL_3OWZ_001, IL_4A1B_091, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_3U5H_098, IL_2C4Z_002, IL_2BQ5_002, IL_2ZJR_056, IL_2BQ5_001, IL_3U5H_030, IL_2XZM_023, IL_4A1C_003, IL_4A1C_002, IL_2BU1_002, IL_2BU1_001, IL_1ET4_008, IL_3UXR_045, IL_4A1B_105, IL_1DUQ_002, IL_3U5H_025, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_2XZM_074, IL_3U5H_143, IL_3U5H_140, IL_2AW7_019, IL_1S72_074, IL_3UCZ_002, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_3U5F_009, IL_3D0U_005, IL_3U5F_001, IL_3D0U_001, IL_3R2D_001, IL_3SD3_002, IL_2IZN_002, IL_2IZN_001, IL_2AW7_002, IL_3IVK_001, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_2IZM_002, IL_3UXR_104, IL_1MFQ_005, IL_1U63_002, IL_3UXR_038, IL_1X8W_001, IL_3UXR_035, IL_3UXR_033, IL_2QBG_035, IL_3G78_004, IL_1FJG_016, IL_3U5H_034, IL_1FJG_014, IL_1S72_096, IL_4A1B_123, IL_3DIR_001, IL_4A1B_121, IL_3U5H_055, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_1S03_002, IL_1S03_001, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_1NBS_005, IL_1R3E_001, IL_1GID_002, IL_1R3E_002, IL_1FJG_007, IL_3IVK_003, IL_4A1B_095, IL_2IZ9_001, IL_2IZ9_002, IL_2ZY6_002, IL_4A1B_039, IL_1U9S_003, IL_4A1B_124, IL_2QBG_070, IL_1ET4_004, IL_4A1B_031, IL_3UXR_020, IL_4A1B_036, IL_3U5H_026, IL_2XZM_057, IL_1U63_004, IL_1FJG_001, IL_1FJG_002, IL_2XZM_013, IL_3U5H_125, IL_1S72_077, IL_3OWZ_005, IL_1FJG_043, IL_3MEI_001, IL_2VPL_005, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_1S72_064, IL_3P49_003, IL_3U5H_129, IL_1S72_067, IL_2XZM_021, IL_4A1B_084, IL_1U9S_001, IL_2AW7_048, IL_1DQH_001, IL_3U5F_066, IL_3UXR_019, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_1FJG_036, IL_2QUX_004, IL_2QUX_005, IL_2QUX_006, IL_1JZV_002, IL_1JZV_005, IL_2QUX_001, IL_2QUX_002, IL_2QUX_003, IL_3U5H_119, IL_2VPL_002, IL_4A1B_101, IL_4A1B_100, IL_3U5H_050, IL_1FUF_002, IL_1FUF_003, IL_2PLY_001, IL_2XZM_024, IL_3U5H_058, IL_3DHS_002, IL_2XZM_029, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_3UCZ_003, IL_1NBS_001, IL_1NBS_002, IL_1DUQ_008, IL_3DHS_003, IL_2ZJR_076IL_2IPY_003, IL_2IPY_006, IL_2QBG_097, IL_2QBG_022, IL_3O58_043, IL_3PYO_068, IL_3PYO_086, IL_2ZJR_091, IL_3O58_108

Children motifs

Child motifCommon motif instancesOnly in IL_97217.1Only in the child motif
IL_97217.2
Compare		IL_3U5F_058, IL_2ZJR_011, IL_3SN2_001, IL_2ZJR_016, IL_2ZJR_015, IL_2AW7_051, IL_3U5F_026, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_2XZM_030, IL_3D2V_001, IL_1S72_040, IL_4A1B_044, IL_3Q1Q_004, IL_2AW7_026, IL_2ZJR_068, IL_4A1B_124, IL_2PN4_003, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_1GID_009, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_3U5H_077, IL_4A1B_131, IL_1S72_030, IL_1S72_096, IL_2XZM_009, IL_2ZJR_093, IL_3B31_001, IL_2XXA_010, IL_3U5H_025, IL_2XXA_012, IL_1S72_002, IL_2NOK_006, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_2ZJR_034, IL_3U5H_026, IL_2ZJR_031, IL_2QBG_089, IL_2XZM_074, IL_3SNP_001, IL_1FJG_040, IL_2XZM_013, IL_4A1B_076, IL_3U5H_003, IL_1S72_064, IL_1S72_067, IL_4A1B_072, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_1U9S_003, IL_3U5F_024, IL_3GX5_001, IL_3IWN_004, IL_3IWN_003, IL_3U5H_089, IL_2OIU_003, IL_3U5H_065, IL_2OIU_001, IL_2AW7_008, IL_2C4Z_001, IL_2XZM_068, IL_3U5H_014, IL_2PJP_001, IL_2XZM_065, IL_2AW7_001, IL_1S72_070, IL_2AW7_002, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_2QBG_023, IL_2QBG_076, IL_3OWZ_005, IL_3OWZ_001, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_2ZJR_056, IL_2BQ5_001, IL_2XZM_023, IL_4A1C_003, IL_4A1C_002, IL_2BU1_001, IL_3R2D_001, IL_1DUQ_002, IL_1MJI_001, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_3U5H_143, IL_3U5H_140, IL_2AW7_019, IL_1JZV_005, IL_1S72_074, IL_3UCZ_002, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_3U5F_009, IL_1FJG_001, IL_3D0U_005, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_3SD3_002, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_1MFQ_005, IL_1U63_002, IL_1X8W_001, IL_2QBG_035, IL_3G78_004, IL_1FJG_016, IL_3U5H_034, IL_1FJG_014, IL_3U5H_030, IL_4A1B_123, IL_3U5H_136, IL_4A1B_121, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_2ZJR_065, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_1S72_014, IL_1GID_002, IL_1R3E_002, IL_3IVK_003, IL_4A1B_095, IL_2IZ9_001, IL_4A1B_091, IL_2ZY6_002, IL_4A1B_039, IL_2QBG_070, IL_1ET4_004, IL_4A1B_031, IL_4A1B_036, IL_2XZM_056, IL_2XZM_057, IL_1FJG_007, IL_3U5H_129, IL_1FJG_002, IL_2QBG_007, IL_397D_001, IL_3U5H_125, IL_1S72_077, IL_3U5H_094, IL_1FJG_043, IL_3MEI_001, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_3U5H_002, IL_3P49_003, IL_4A1B_088, IL_1GID_012, IL_2XZM_021, IL_4A1B_084, IL_1U9S_001, IL_2AW7_048, IL_1DQH_001, IL_3U5F_066, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_1FJG_036, IL_1JZV_002, IL_4A1B_105, IL_2QUX_002, IL_3UCZ_003, IL_2VPL_002, IL_4A1B_101, IL_4A1B_100, IL_3U5H_050, IL_1FUF_002, IL_1FUF_003, IL_3U5H_055, IL_2XZM_024, IL_3U5H_058, IL_2XZM_029, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_2ZJR_072, IL_3DHS_002, IL_1NBS_005, IL_2ZJR_076IL_2PN4_008, IL_2BQ5_002, IL_3UXR_002, IL_3UXR_066, IL_2BU1_002, IL_3UXR_104, IL_3UXR_020, IL_3UXR_045, IL_2QUX_004, IL_1DUQ_004, IL_1MJI_003, IL_3SNP_003, IL_1DUQ_008, IL_2C50_002, IL_3D2V_004, IL_2PLY_001, IL_2VPL_005, IL_2IZN_002, IL_2XXA_003, IL_3IVK_001, IL_2XXA_005, IL_1DUQ_006, IL_2IZM_002, IL_1U63_004, IL_3UXR_038, IL_3UXR_019, IL_3UXR_035, IL_3UXR_033, IL_3UXR_073, IL_2QUX_005, IL_2QUX_006, IL_3UXR_056, IL_3UXR_077, IL_2C4Z_002, IL_1ET4_008, IL_2QUX_003, IL_1S03_002, IL_1S03_001, IL_2IZ9_002, IL_2QUX_001IL_4AOB_001, IL_3V2F_033, IL_3V2F_077, IL_3V2F_045, IL_3V2F_073, IL_3V2F_019, IL_3V2F_056, IL_3TZR_002, IL_3V2F_104, IL_3V2F_035, IL_3V2F_002, IL_3V2F_038, IL_3V2F_066, IL_3V2F_020
Annotations
  • Single bulged A (12)
  • Single bulged U (11)
  • Single bulged C (7)
  • Multiple bulged bases (7)
  • Single bulged G (4)
  • Major groove outside cWW, minor groove, intercalation pocket (2)
    • Basepair signature
    04_cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.43 | Max 0.99
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