#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-104-95-86-7
1 IL_2XXA_0082XXA0.00000F SSRP RNAU40C41A42G43A44G45*C54A55G56C57A58G59cWWntSHntHWtHScWwcWW
2 IL_1DUH_0021DUH0.00000A4.5S RNA DOMAIN IVU45C46A47G48G49U50*A59||||4_555A60||||4_555G61||||4_555C62||||4_555A63||||4_555G64||||4_555cWWtSHtHWtHScWWcWW
3 IL_1DUH_0041DUH0.20890A4.5S RNA DOMAIN IVU45||||4_555C46||||4_555A47||||4_555G48||||4_555G49||||4_555U50||||4_555*A59A60G61C62A63G64cWWtSHtHWtHScWWcWW
4 IL_2XXA_0152XXA0.21010G SSRP RNAU40C41A42G43A44G45*C54A55G56C57A58G59cWWntSHntHWtHScWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCAGAG*CAGCAG2
UCAGGU*AAGCAG1
AAGCAG*UCAGGU1
Non-Watson-Crick part of the motif
SequenceCounts
CAGA*AGCA2
CAGG*AGCA1
AGCA*CAGG1

Release history

Release0.5
Date2011-12-08
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_99388.1Only in the parent motif
IL_92741.1
Compare
IL_1DUH_002, IL_1DUH_004IL_2XXA_008, IL_2XXA_015IL_2PXV_002, IL_1LNT_002, IL_3G78_007, IL_1L9A_008, IL_1D4R_002

Children motifs

Child motifCommon motif instancesOnly in IL_99388.1Only in the child motif
IL_47444.1
Compare
IL_1DUH_002, IL_2XXA_008, IL_1DUH_004, IL_2XXA_015IL_2PXV_002, IL_1LNT_002, IL_3G78_007, IL_3U5H_127, IL_1MFQ_007, IL_1D4R_002
Annotations
  • (4)
  • Basepair signature
    Heat map statistics
    Min 0.01 | Avg 0.11 | Max 0.21
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.2765 s