Motif IL_99388.1 Version IL_99388.1 of this group appears in releases 0.5 to 0.5
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2XXA_008 | 2XXA | 0.0000 | 0 | F | SSRP RNA | U | 40 | C | 41 | A | 42 | G | 43 | A | 44 | G | 45 | * | C | 54 | A | 55 | G | 56 | C | 57 | A | 58 | G | 59 | cWW | ntSH | ntHW | tHS | cWw | cWW |
2 | IL_1DUH_002 | 1DUH | 0.0000 | 0 | A | 4.5S RNA DOMAIN IV | U | 45 | C | 46 | A | 47 | G | 48 | G | 49 | U | 50 | * | A | 59||||4_555 | A | 60||||4_555 | G | 61||||4_555 | C | 62||||4_555 | A | 63||||4_555 | G | 64||||4_555 | cWW | tSH | tHW | tHS | cWW | cWW |
3 | IL_1DUH_004 | 1DUH | 0.2089 | 0 | A | 4.5S RNA DOMAIN IV | U | 45||||4_555 | C | 46||||4_555 | A | 47||||4_555 | G | 48||||4_555 | G | 49||||4_555 | U | 50||||4_555 | * | A | 59 | A | 60 | G | 61 | C | 62 | A | 63 | G | 64 | cWW | tSH | tHW | tHS | cWW | cWW |
4 | IL_2XXA_015 | 2XXA | 0.2101 | 0 | G | SSRP RNA | U | 40 | C | 41 | A | 42 | G | 43 | A | 44 | G | 45 | * | C | 54 | A | 55 | G | 56 | C | 57 | A | 58 | G | 59 | cWW | ntSH | ntHW | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCAGAG*CAGCAG | 2 |
UCAGGU*AAGCAG | 1 |
AAGCAG*UCAGGU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAGA*AGCA | 2 |
CAGG*AGCA | 1 |
AGCA*CAGG | 1 |
Release history
Release | 0.5 |
---|---|
Date | 2011-12-08 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_99388.1 | Only in the parent motif |
---|---|---|---|
IL_92741.1 Compare | IL_1DUH_002, IL_1DUH_004 | IL_2XXA_008, IL_2XXA_015 | IL_2PXV_002, IL_1LNT_002, IL_3G78_007, IL_1L9A_008, IL_1D4R_002 |
Children motifs
Child motif | Common motif instances | Only in IL_99388.1 | Only in the child motif |
---|---|---|---|
IL_47444.1 Compare | IL_1DUH_002, IL_2XXA_008, IL_1DUH_004, IL_2XXA_015 | IL_2PXV_002, IL_1LNT_002, IL_3G78_007, IL_3U5H_127, IL_1MFQ_007, IL_1D4R_002 |
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