Motif IL_12582.1 Version IL_12582.1 of this group appears in releases 2.0 to 2.0
#S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 5-6 | 5-7 | 8-9 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ➜ | 5A2Q | 0.3204 | 2 | SSU rRNA | A | 599 | G | 600 | G | 601 | G | 602 | C | 603 | A | 604 | A | 605 | G | 606 | * | C | 636 | U | 637 | cWW | cSH | cWW | ||
2 | ➜ | 3JAM | 0.2885 | 2 | SSU rRNA | A | 549 | G | 550 | G | 551 | G | 552 | C | 553 | A | 554 | A | 555 | G | 556 | * | C | 586 | U | 587 | cWW | cWW | |||
3 | ➜ | 4BTS | 0.2794 | DA | SSU rRNA | A | 543 | G | 544 | G | 545 | G | 546 | C | 547 | A | 548 | A | 549 | G | 550 | * | C | 581 | U | 582 | cWW | cSH | cWW | ||
4 | ➜ | 4V88 | 0.2982 | SSU/LSU pseudoknot | A6 | SSU rRNA | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | cSH | cWW | |
5 | ➜ | 3J7A | 0.2784 | A | SSU rRNA | A | 557 | G | 558 | G | 559 | G | 560 | C | 561 | A | 562 | A | 563 | G | 564 | * | C | 594 | U | 595 | cWW | cSH | cWW | ||
6 | ➜ | 4V4Q | 0.2405 | CA | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | U | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | cWW | |||
7 | ➜ | 1FJG | 0.2422 | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | cSH | ntSW | cWW | |
8 | ➜ | 3J9W | 0.2356 | AA | SSU rRNA | C | 513 | G | 514 | G | 515 | C | 516 | U | 517 | A | 518 | A | 519 | C | 520 | * | G | 549 | G | 550 | cWW | cSH | ntSW | cWW | |
9 | ➜ | 4V8P | 0.0000 | F1 | LSU rRNA | C | 1200 | G | 1201 | C | 1202 | C | 1203 | C | 1204 | A | 1205 | A | 1206 | A | 1207 | * | U | 1352 | G | 1353 | cWW | cSH | ntSW | cWW | |
10 | ➜ | 4V9F | 0.1614 | SSU/LSU pseudoknot | 0 | LSU rRNA | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW | |
11 | ➜ | 5FDU | 0.1803 | 1A | LSU rRNA | C | 1050 | C | 1051 | C | 1052 | C | 1053 | C | 1054 | A | 1055 | A | 1056 | G | 1057 | * | C | 1196 | G | 1197 | cWW | cSH | cWW | ||
12 | ➜ | 4IOA | 0.1909 | X | LSU rRNA | U | 1015 | C | 1016 | C | 1017 | C | 1018 | U | 1019 | A | 1020 | A | 1021 | A | 1022 | * | U | 1161 | A | 1162 | cWW | cSH | cWW | ||
13 | ➜ | 5J7L | 0.2270 | SSU/LSU pseudoknot | DA | LSU rRNA | U | 1004 | C | 1005 | C | 1006 | C | 1007 | A | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | A | 1151 | cWW | cSH | ntSW | cWW |
14 | ➜ | 3J9W | 0.2678 | BA | LSU rRNA | U | 1050 | C | 1051 | C | 1052 | C | 1053 | A | 1054 | A | 1055 | A | 1056 | G | 1057 | * | C | 1196 | A | 1197 | cWW | ncSH | ntSW | cWW | |
15 | ➜ | 4V91 | 0.3453 | 1 | LSU rRNA | U | 1173 | G | 1174 | C | 1175 | C | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | * | U | 1325 | A | 1326 | cWW | ncHH | cWW | ||
16 | ➜ | 4V88 | 0.3468 | A5 | LSU rRNA | U | 1173 | G | 1174 | C | 1175 | C | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | * | U | 1325 | A | 1326 | cWW | ncHH | cWW | ||
17 | ➜ | 5AN9 | 0.3482 | N | LSU rRNA | C | 1410 | G | 1411 | U | 1412 | C | 1413 | U | 1414 | A | 1415 | A | 1416 | C | 1417 | * | G | 1561 | G | 1562 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGGGCAAG*CU | 5 |
UGCCGGAA*UA | 2 |
CGGCUAAC*GG | 2 |
UCCCAAAG*CA | 2 |
CGUCUAAC*GG | 1 |
UCCCUAAA*UA | 1 |
UCCCCAAG*CA | 1 |
CGGCCAAC*GG | 1 |
CGCCCAAA*UG | 1 |
CCCCCAAG*CG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGGCAA* | 5 |
CCCAAA* | 2 |
GCCGGA* | 2 |
CCCCAA* | 2 |
GGCUAA* | 2 |
GUCUAA* | 1 |
GGCCAA* | 1 |
CCCUAA* | 1 |
GCCCAA* | 1 |
Release history
Release | 2.0 |
---|---|
Date | 2017-04-24 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- SSU/LSU pseudoknot (3)
- Basepair signature
- cWW-L-L-L-cSH-L-cWW
- Heat map statistics
- Min 0.08 | Avg 0.28 | Max 0.44
Coloring options: