Motif IL_49493.8 Version IL_49493.8 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13	1-12	1-13	2-11	2-12	3-4	3-11	4-5	5-10	6-9	7-8
1	IL_3DVZ_001	3DVZ	0.2645	0		A	Sarcin/Ricin Domain from E. Coli 23 S rRNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668		cWW		ntSH			cSH	tWH	tHS	cWW
2	IL_1VW3_084	1VW3	0.2992	0		A	21S ribosomal RNA	U	2919	U	2920	A	2921	G	2922	U	2923	A	2924	C	2925	*	G	2930	G	2931	A	2932	C	2933	C	2934	A	2935		cWW		ncSW		ntHH	cSH	tWH	tHS	cWW
3	IL_4QCN_100	4QCN	0.3166	0		A	23S Ribosomal RNA	C	2664	U	2665	A	2666	G	2667	U	2668	A	2669	C	2670	*	G	2675	G	2676	A	2677	C	2678	C	2679	G	2680		cWW		ncSW	ncSS		cSH	tWH	tHS	cWW
4	IL_4IOA_096	4IOA	0.3062	0	Sarcin-Ricin target in LSU H95; G-bulge	X	LSU rRNA	C	2631	U	2632	A	2633	G	2634	U	2635	A	2636	C	2637	*	G	2642	G	2643	A	2644	C	2645	C	2646	G	2647		cWW		ncSW		ntHH	cSH	tWH	tHS	cWW
5	IL_1S72_020	1S72	0.2573	0		0	LSU rRNA	C	585	C	586	A	587	G	588	U	589	A	590	A	591	*	U	567	G	568	A	569	C	570	C	571	G	572		cWW				ntHH	cSH	tWH	tHS	cWW
6	IL_1S72_007	1S72	0.1787	0		0	LSU rRNA	U	210	U	211	A	212	G	213	U	214	A	215	A	216	*	U	224	G	225	A	226	A	227	C	228	G	229		cWW		tSH		tHH	cSH	tWH	tHS	cWW
7	IL_4QCN_007	4QCN	0.1440	0		A	23S Ribosomal RNA	U	228	G	229	A	230	G	231	U	232	A	233	G	234	*	C	242	G	243	A	244	A	245	A	246	G	247		cWW		tSH		tHH	cSH	tWH	tHS	cWW
8	IL_2QBG_012	2QBG	0.1390	0		B	23S rRNA	C	239	C	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	C	257	G	258		cWW		tSH		tHH	cSH	tWH	tHS	cWW
9	IL_1VW3_013	1VW3	0.0000	0		A	21S ribosomal RNA	U	279	G	280	A	281	G	282	U	283	A	284	U	285	*	A	293	G	294	A	295	A	296	A	297	A	298		cWW		tSH		tHH	cSH	tWH	tHS	cWW
10	IL_1S72_103	1S72	0.1513	0		9	5S rRNA	G	75	G	76	A	77	G	78	U	79	A	80	C	81	*	G	101	G	102	A	103	A	104	A	105	C	106		cWW		tSH		tHH	cSH	tWH	tHS	cWW
11	IL_1NBS_007	1NBS	0.1581	0	7x6 Sarcin-Ricin; G-bulge	B	RNase P class B	U	165	G	166	A	167	G	168	U	169	A	170	U	171	*	A	138	A	139	A	140	A	141	A	142	A	143		cWW		tSH		tHH	cSH	ntWH	tHS	cWW
12	IL_1VX6_067	1VX6	0.1902	0		A	28S ribosomal RNA	G	1593	A	1594	A	1595	G	1596	U	1597	A	1598	G	1599	*	C	2647	G	2648	A	2649	A	2650	A	2651	C	2652		cWW		tSH		tHH	cSH	tWH	tHS	cWW
13	IL_4CUV_068	4CUV	0.2306	0		1	25S RRNA	G	1444	U	1445	A	1446	G	1447	U	1448	A	1449	G	1450	*	C	2354	G	2355	A	2356	A	2357	A	2358	C	2359		cWW		tSH	ncSS	tHH	cSH	tWH	tHS	cWW
14	IL_3U5H_066	3U5H	0.2230	0		5	25S rRNA	G	1444	U	1445	A	1446	G	1447	U	1448	A	1449	G	1450	*	C	2354	G	2355	A	2356	A	2357	A	2358	C	2359		cWW		tSH		tHH	cSH	tWH	tHS	cWW
15	IL_4A1B_064	4A1B	0.2392	0		1	26S RRNA	G	1470	U	1471	A	1472	G	1473	U	1474	A	1475	G	1476	*	C	2349	G	2350	A	2351	A	2352	C	2353	C	2354		cWW		tSH	ncSS	tHH	cSH	tWH	tHS	cWW
16	IL_1S72_090	1S72	0.1875	0		0	LSU rRNA	A	2689	U	2690	A	2691	G	2692	U	2693	A	2694	C	2695	*	G	2700	G	2701	A	2702	A	2703	C	2704	U	2705		cWW		tSH		tHH	cSH	tWH	tHS	cWW
17	IL_4W21_092	4W21	0.2551	0		5	28S ribosomal RNA	G	2358	U	2359	A	2360	G	2361	U	2362	A	2363	G	2364	*	C	3858	G	3859	A	3860	A	3861	A	3862	C	3863	ncWW	ncWW	ntWH	ntSH		ntHH	cSH	tWH	tHS	cWW
18	IL_1S72_049	1S72	0.2311	0		0	LSU rRNA	A	1367	U	1368	A	1369	G	1370	U	1371	A	1372	G	1373	*	U	2052	G	2053	A	2054	A	2055	C	2056	U	2057		cWW		tSH		tHH	cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAGUAC*GGACCG	3
GUAGUAG*CGAAAC	3
UUAGUAC*GGACCA	1
CCAGUAA*UGACCG	1
UUAGUAA*UGAACG	1
UGAGUAG*CGAAAG	1
CCAGUAG*CGAACG	1
UGAGUAU*AGAAAA	1
GGAGUAC*GGAAAC	1
UGAGUAU*AAAAAA	1
GAAGUAG*CGAAAC	1
GUAGUAG*CGAACC	1
AUAGUAC*GGAACU	1
AUAGUAG*UGAACU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGUA*GACC	4
UAGUA*GAAC	4
GAGUA*GAAA	3
UAGUA*GAAA	3
CAGUA*GACC	1
CAGUA*GAAC	1
GAGUA*AAAA	1
AAGUA*GAAA	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_49493.8	Only in the parent motif
IL_49493.7 Compare	IL_4CUV_068, IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_4A1B_064, IL_1NBS_007, IL_1S72_007, IL_1S72_020, IL_1S72_049, IL_4QCN_007, IL_1S72_090, IL_4QCN_100, IL_1VW3_084, IL_1VX6_067, IL_2QBG_012, IL_4IOA_096, IL_1VW3_013	IL_4W21_092

Children motifs

This motif has no children motifs.

Annotations: 7x6 Sarcin-Ricin; G-bulge (1)
Sarcin-Ricin target in LSU H95; G-bulge (1)
Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.10 | Avg 0.25 | Max 0.44

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Coloring options: Nucleotide numbers

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