Description:
Triple sheared
Basepair signature:
10_cWW-tSH-tHS-tHS-cWW
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.11 | Avg 0.46 | Max 0.80
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDisc 1 2 3 4 5break 6 7 8 9 101-102-32-72-82-93-73-84-64-75-65-78-98-10
1312ZJR0.0000U616U617A618A619G620*C629G630G631A632G633cWWtHScWW
2293UXR0.4705U606U607A608A609G610*C618G619G620A621G622cWWntWHntHWtHScWWperpperp
3301S720.4267C663U664A665A666C667*G679G680G681A682G683cWWntWHtHScWWncHH
4282QBG0.4672U606U607A608A609C610*G618G619G620A621G622cWWntWHtHScWWperpperp
5173G780.5771C70U71A72A73C74*G113G114A115C116G117cWWntSHntHStHScWWncSH
6164A1B0.6275U3217U3218A3219A3220C3221*G3189A3190G3191C3192G3193cWWntSHntHStHScWW
7143DHS0.6400C284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
8183UCZ0.5790C22A23A24A25C26*G41G42A43C44G45cWWntSHtHScWW
9243U5F0.7347A1719G1720A1721A1722U1723*A1678G1679G1680A1681U1682cWWntSWtHStHScWW
10253UXR0.7203C1882G1883A1884A1885C1886*G1856G1857G1858A1859G1860cWWtSHtHStHScWW
1172A640.6987C378G379A380A381G382*C347G348G349A350G351cWWntSHtHSntHScWW
12263IWN0.6001C12A13A14A15C16*G31G32A33C34G35cWWntSHntHStHScWWncSH
13102QBG0.7284U1720G1721A1722G1723G1724*U1736G1737G1738A1739G1740cWWtSHtHSntHScWW
1442A640.6902C284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
15222XZM0.7222G1672A1673A1674A1675A1676*U1649G1650G1651A1652C1653cWWntSHtHStHScWW
1613U5H0.7956U1645G1646A1647A1648U1649*A1806G1807G1808A1809A1810cWWtSHtHStHScWW
1764A1B0.6789C2837G2838A2839C2840G2841*C2823C2824A2825A2826G2827cWWtSHtHSbifcWW
18212ZJR0.6448C1865G1866A1867A1868A1869*U1848G1849G1850A1851G1852cWWntSHntHSntHScWW
19273UXR0.5950C2480G2481G2482C2483G2484*C2466C2467G2468A2469G2470cWWtSHntHSbifcWW
20202QBG0.6665C2480G2481A2482C2483G2484*C2466C2467A2468A2469G2470cWWtSHtHSbifcWW
21122ZJR0.5938C2459G2460G2461C2462G2463*C2445C2446G2447A2448G2449cWWtSHntHScWW
22232QBG0.7124U703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
23151U6B0.6554G56A57A58A59C60*G84C85A86A87C88cWWtSHtHScWWncWW
2421S720.7779U794G795A796A797G798*U815G816G817A818A819cWWtSHtHStHScWW
25113U5H0.6891C2849G2850A2851C2852A2853*U2835C2836A2837A2838G2839cWWtSHtHScWW
2633UXR0.7202U703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
2751S720.7096C2515G2516A2517C2518C2519*G2501C2502A2503A2504G2505cWWtSHtHScWW
2893U5H0.7934U834G835A836A837G838*U855G856G857A858G859cWWtSHtHStHScWW
29132XZM0.6549U525U526A527G528C529*G509A510A511C512A513cWWncWHncWWncWWntSHtHSncWScWWncWS
3082AW70.7217C1259G1260A1261C1262C1263*G1272C1273A1274A1275G1276cWWtSHtHSbifcWW
31192QWY0.6429A46A47A48A49G50*C16G17U18A19U20cWWntSHtSHntHWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAG*CGGAG3
UGAAG*UGGAG3
UUAAG*CGGAG2
CGGCG*CCGAG2
CGACG*CCAAG2
CAAAC*GGACG2
CGACC*GCAAG2
UUAGC*GAACA1
AAAAG*CGUAU1
CGACA*UCAAG1
UGAAG*UGGAA1
GAAAC*GCAAC1
CGAAA*UGGAG1
GAAAA*UGGAC1
CUAAC*GGACG1
UUAAC*GGGAG1
CUAAC*GGGAG1
UUAAC*GAGCG1
AGAAU*AGGAU1
UGAGG*UGGAG1
CGAAC*GGGAG1
UGAAU*AGGAA1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*GGA11
GAC*CAA5
UAA*GGA4
AAA*GAC2
GGC*CGA2
UAG*AAC1
AAA*CAA1
AAA*GUA1
GAG*GGA1
UAA*GAC1
UAA*AGC1
AAA*GGA1

Release history

Release0.6
Date2012-04-02
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_87904.1Only in the parent motif
IL_78374.1
Compare
IL_2QBG_024, IL_2QBG_068, IL_1S72_028, IL_2XZM_092, IL_3G78_002, IL_3IWN_002, IL_2A64_005, IL_2A64_006IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_1S72_021, IL_2ZJR_088, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004IL_3O58_085, IL_3PYO_067, IL_3O58_044, IL_3PYO_020
IL_94031.1
Compare
IL_1U6B_002, IL_2QBG_094, IL_2AW7_058, IL_1S72_083, IL_2ZJR_088, IL_2XZM_027IL_2ZJR_012, IL_3UXR_021, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_2QBG_024, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2ZJR_071, IL_3DHS_004
IL_80407.1
Compare
IL_2QBG_019, IL_2ZJR_012, IL_1S72_021, IL_2ZJR_071IL_2AW7_058, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_3DHS_004, IL_2A64_005IL_3PYO_015, IL_3O30_034, IL_3MUR_002
IL_24982.1
Compare
IL_2QWY_001IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004, IL_2A64_005IL_2AW7_030, IL_1S72_055, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_3PYO_049, IL_1FJG_023, IL_1S72_023, IL_2QBG_052, IL_2QWY_007, IL_2XZM_049, IL_2QWY_004
IL_84234.1
Compare
IL_3DHS_004IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_2A64_005

Children motifs

Child motifCommon motif instancesOnly in IL_87904.1Only in the child motif
IL_87904.2
Compare
IL_2AW7_058, IL_2ZJR_012, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_2QWY_001, IL_2QBG_024, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_2QBG_068, IL_1U6B_002, IL_2QBG_094, IL_3U5F_091, IL_2QBG_019, IL_2ZJR_088, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004IL_3UXR_072, IL_3UXR_093, IL_3UXR_021, IL_3UXR_016IL_3V2F_072, IL_3V2F_092, IL_3V2F_021, IL_3V2F_016

Mutual discrepancy heat map legend: