IL_87904.1

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-3	2-8	2-9	3-7	3-8	4-7	5-6
1	IL_3U5H_075➜	3U5H	0.7956		5	25S rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW			tSH		tHS	tHS	cWW
2	IL_1S72_028➜	1S72	0.7779		0	LSU rRNA	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819	cWW	ncSH		tSH		tHS	tHS	cWW
3	IL_3UXR_021➜	3UXR	0.7202		A	23S ribosomal RNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW			tSH		tHS	tHS	cWW
4	IL_2A64_005➜	2A64	0.6902	Triple sheared	A	ribonuclease P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW			tSH		tHS	tHS	cWW
5	IL_1S72_083➜	1S72	0.7096		0	LSU rRNA	C	2515	G	2516	A	2517	C	2518	C	2519	*	G	2501	C	2502	A	2503	A	2504	G	2505	cWW			tSH		tHS		cWW
6	IL_4A1B_110➜	4A1B	0.6789		1	26S RRNA	C	2837	G	2838	A	2839	C	2840	G	2841	*	C	2823	C	2824	A	2825	A	2826	G	2827	cWW			tSH		tHS		cWW
7	IL_2A64_006➜	2A64	0.6987	Triple sheared	A	ribonuclease P RNA	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351	cWW			ntSH		tHS	tHS	cWW
8	IL_2AW7_058➜	2AW7	0.7217		A	16S ribosomal RNA	C	1259	G	1260	A	1261	C	1262	C	1263	*	G	1272	C	1273	A	1274	A	1275	G	1276	cWW			tSH		tHS		cWW
9	IL_3U5H_032➜	3U5H	0.7934		5	25S rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW			tSH		tHS	tHS	cWW
10	IL_2QBG_068➜	2QBG	0.7284		B	23S rRNA	U	1720	G	1721	A	1722	G	1723	G	1724	*	U	1736	G	1737	G	1738	A	1739	G	1740	cWW			tSH		tHS	ntHS	cWW
11	IL_3U5H_112➜	3U5H	0.6891		5	25S rRNA	C	2849	G	2850	A	2851	C	2852	A	2853	*	U	2835	C	2836	A	2837	A	2838	G	2839	cWW			tSH		tHS		cWW
12	IL_2ZJR_088➜	2ZJR	0.5938		X	LSU rRNA	C	2459	G	2460	G	2461	C	2462	G	2463	*	C	2445	C	2446	G	2447	A	2448	G	2449	cWW			tSH		ntHS		cWW
13	IL_2XZM_027➜	2XZM	0.6549		A	18S RRNA	U	525	U	526	A	527	G	528	C	529	*	G	509	A	510	A	511	C	512	A	513	cWW		ncWW	ntSH		tHS	ncWS	cWW
14	IL_3DHS_004➜	3DHS	0.6400	Triple sheared	A	RNase P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	cSH		tSH		ntHS	tHS	cWW
15	IL_1U6B_002➜	1U6B	0.6554	Triple sheared	B	197-MER	G	56	A	57	A	58	A	59	C	60	*	G	84	C	85	A	86	A	87	C	88	cWW			tSH		tHS		cWW
16	IL_4A1B_125➜	4A1B	0.6275		1	26S RRNA	U	3217	U	3218	A	3219	A	3220	C	3221	*	G	3189	A	3190	G	3191	C	3192	G	3193	cWW			ntSH		ntHS	tHS	cWW
17	IL_3G78_002➜	3G78	0.5771		A	Group II catalytic intron D1-D4-1	C	70	U	71	A	72	A	73	C	74	*	G	113	G	114	A	115	C	116	G	117	cWW			ntSH		ntHS	tHS	cWW
18	IL_3UCZ_001➜	3UCZ	0.5790		R	RNA (92-MER)	C	22	A	23	A	24	A	25	C	26	*	G	41	G	42	A	43	C	44	G	45	cWW			ntSH			tHS	cWW
19	IL_2QWY_001➜	2QWY	0.6429		A	SAM-II riboswitch	A	46	A	47	A	48	A	49	G	50	*	C	16	G	17	U	18	A	19	U	20	cWW			tSH		ntHW	tHS	cWW
20	IL_2QBG_094➜	2QBG	0.6665		B	23S rRNA	C	2480	G	2481	A	2482	C	2483	G	2484	*	C	2466	C	2467	A	2468	A	2469	G	2470	cWW			tSH		tHS		cWW
21	IL_2ZJR_071➜	2ZJR	0.6448		X	LSU rRNA	C	1865	G	1866	A	1867	A	1868	A	1869	*	U	1848	G	1849	G	1850	A	1851	G	1852	cWW			tSH	ntHS		ntHS	cWW
22	IL_2XZM_092➜	2XZM	0.7222		A	18S RRNA	G	1672	A	1673	A	1674	A	1675	A	1676	*	U	1649	G	1650	G	1651	A	1652	C	1653	cWW			ntSH		tHS	tHS	cWW
23	IL_2QBG_024➜	2QBG	0.7124		B	23S rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW			tSH		tHS	tHS	cWW
24	IL_3U5F_091➜	3U5F	0.7347		6	18S rRNA	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682	cWW			ntSW		tHS	tHS	cWW
25	IL_3UXR_072➜	3UXR	0.7203		A	23S ribosomal RNA	C	1882	G	1883	A	1884	A	1885	C	1886	*	G	1856	G	1857	G	1858	A	1859	G	1860	cWW			tSH		tHS	tHS	cWW
26	IL_3IWN_002➜	3IWN	0.6001	Triple sheared	A	C-di-GMP riboswitch	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35	cWW			ntSH			tHS	cWW
27	IL_3UXR_093➜	3UXR	0.5950		A	23S ribosomal RNA	C	2480	G	2481	G	2482	C	2483	G	2484	*	C	2466	C	2467	G	2468	A	2469	G	2470	cWW			tSH		ntHS		cWW
28	IL_2QBG_019➜	2QBG	0.4672		B	23S rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622	cWW			ntWH			tHS	cWW
29	IL_3UXR_016➜	3UXR	0.4705		A	23S ribosomal RNA	U	606	U	607	A	608	A	609	G	610	*	C	618	G	619	G	620	A	621	G	622	cWW			ntWH			tHS	cWW
30	IL_1S72_021➜	1S72	0.4267		0	LSU rRNA	C	663	U	664	A	665	A	666	C	667	*	G	679	G	680	G	681	A	682	G	683	cWW			ntWH			tHS	cWW
31	IL_2ZJR_012➜	2ZJR	0.0000		X	LSU rRNA	U	616	U	617	A	618	A	619	G	620	*	C	629	G	630	G	631	A	632	G	633	cWW						tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAG*CGGAG	3
UGAAG*UGGAG	3
CAAAC*GGACG	2
CGACG*CCAAG	2
UUAAG*CGGAG	2
CGACC*GCAAG	2
UGGAC*GAAAA	1
CGAAA*UGGAG	1
CUAAC*GGGAG	1
AGAAU*AGGAU	1
GGGAG*CGAAC	1
AAAAG*CGUAU	1
UUAAC*GGGAG	1
CCGAG*CGGCG	1
UUAAC*GAGCG	1
CGACA*UCAAG	1
UGAGG*UGGAG	1
UGAAG*UGGAA	1
CGGCG*CCGAG	1
GAACA*UUAGC	1
UGAAU*AGGAA	1
GAAAC*GCAAC	1
CUAAC*GGACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	10
GAC*CAA	5
UAA*GGA	4
AAA*GAC	2
AAA*GUA	1
CGA*GGC	1
GGA*GAA	1
GGA*AAA	1
UAA*AGC	1
GAG*GGA	1
GGC*CGA	1
AAC*UAG	1
AAA*CAA	1
UAA*GAC	1

Release history

Release	0.6
Date	2012-04-02
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_87904.1	Only in the parent motif
IL_78374.1 Compare	IL_2QBG_024, IL_2QBG_068, IL_1S72_028, IL_2XZM_092, IL_3G78_002, IL_3IWN_002, IL_2A64_005, IL_2A64_006	IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_1S72_021, IL_2ZJR_088, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004	IL_3O58_085, IL_3PYO_067, IL_3O58_044, IL_3PYO_020
IL_94031.1 Compare	IL_1U6B_002, IL_2QBG_094, IL_2AW7_058, IL_1S72_083, IL_2ZJR_088, IL_2XZM_027	IL_2ZJR_012, IL_3UXR_021, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_2QBG_024, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2ZJR_071, IL_3DHS_004
IL_80407.1 Compare	IL_2QBG_019, IL_2ZJR_012, IL_1S72_021, IL_2ZJR_071	IL_2AW7_058, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_3DHS_004, IL_2A64_005	IL_3PYO_015, IL_3O30_034, IL_3MUR_002
IL_24982.1 Compare	IL_2QWY_001	IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004, IL_2A64_005	IL_2AW7_030, IL_1S72_055, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_3PYO_049, IL_1FJG_023, IL_1S72_023, IL_2QBG_052, IL_2QWY_007, IL_2XZM_049, IL_2QWY_004
IL_84234.1 Compare	IL_3DHS_004	IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_2A64_005

Children motifs

Child motif	Common motif instances	Only in IL_87904.1	Only in the child motif
IL_87904.2 Compare	IL_2AW7_058, IL_2ZJR_012, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_2QWY_001, IL_2QBG_024, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_2QBG_068, IL_1U6B_002, IL_2QBG_094, IL_3U5F_091, IL_2QBG_019, IL_2ZJR_088, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004	IL_3UXR_072, IL_3UXR_093, IL_3UXR_021, IL_3UXR_016	IL_3V2F_072, IL_3V2F_092, IL_3V2F_021, IL_3V2F_016

Motif IL_87904.1 Version IL_87904.1 of this group appears in releases 0.6 to 0.6 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_87904.1 Version IL_87904.1 of this group appears in releases 0.6 to 0.6

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Csv

Json