Annotations
  • Triple sheared (5)
  • Basepair signature
    10_cWW-tSH-tHS-tHS-cWW
    Intraclusteral linkage
    Min 0.11 | Avg 0.46 | Max 0.80
    Help
    #D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
    #D#SLoop idPDBDiscAnnotation 1 2 3 4 5break 6 7 8 9 101-102-32-82-93-73-84-75-6
    1613U5H0.7956 U1645G1646A1647A1648U1649*A1806G1807G1808A1809A1810cWWtSHtHStHScWW
    2421S720.7779 U794G795A796A797G798*U815G816G817A818A819cWWncSHtSHtHStHScWW
    2633UXR0.7202 U703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
    1442A640.6902Triple shearedC284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
    2751S720.7096 C2515G2516A2517C2518C2519*G2501C2502A2503A2504G2505cWWtSHtHScWW
    1764A1B0.6789 C2837G2838A2839C2840G2841*C2823C2824A2825A2826G2827cWWtSHtHScWW
    1172A640.6987Triple shearedC378G379A380A381G382*C347G348G349A350G351cWWntSHtHStHScWW
    3082AW70.7217 C1259G1260A1261C1262C1263*G1272C1273A1274A1275G1276cWWtSHtHScWW
    2893U5H0.7934 U834G835A836A837G838*U855G856G857A858G859cWWtSHtHStHScWW
    13102QBG0.7284 U1720G1721A1722G1723G1724*U1736G1737G1738A1739G1740cWWtSHtHSntHScWW
    25113U5H0.6891 C2849G2850A2851C2852A2853*U2835C2836A2837A2838G2839cWWtSHtHScWW
    21122ZJR0.5938 C2459G2460G2461C2462G2463*C2445C2446G2447A2448G2449cWWtSHntHScWW
    29132XZM0.6549 U525U526A527G528C529*G509A510A511C512A513cWWncWWntSHtHSncWScWW
    7143DHS0.6400Triple shearedC284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
    23151U6B0.6554Triple shearedG56A57A58A59C60*G84C85A86A87C88cWWtSHtHScWW
    6164A1B0.6275 U3217U3218A3219A3220C3221*G3189A3190G3191C3192G3193cWWntSHntHStHScWW
    5173G780.5771 C70U71A72A73C74*G113G114A115C116G117cWWntSHntHStHScWW
    8183UCZ0.5790 C22A23A24A25C26*G41G42A43C44G45cWWntSHtHScWW
    31192QWY0.6429 A46A47A48A49G50*C16G17U18A19U20cWWtSHntHWtHScWW
    20202QBG0.6665 C2480G2481A2482C2483G2484*C2466C2467A2468A2469G2470cWWtSHtHScWW
    18212ZJR0.6448 C1865G1866A1867A1868A1869*U1848G1849G1850A1851G1852cWWtSHntHSntHScWW
    15222XZM0.7222 G1672A1673A1674A1675A1676*U1649G1650G1651A1652C1653cWWntSHtHStHScWW
    22232QBG0.7124 U703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
    9243U5F0.7347 A1719G1720A1721A1722U1723*A1678G1679G1680A1681U1682cWWntSWtHStHScWW
    10253UXR0.7203 C1882G1883A1884A1885C1886*G1856G1857G1858A1859G1860cWWtSHtHStHScWW
    12263IWN0.6001Triple shearedC12A13A14A15C16*G31G32A33C34G35cWWntSHtHScWW
    19273UXR0.5950 C2480G2481G2482C2483G2484*C2466C2467G2468A2469G2470cWWtSHntHScWW
    4282QBG0.4672 U606U607A608A609C610*G618G619G620A621G622cWWntWHtHScWW
    2293UXR0.4705 U606U607A608A609G610*C618G619G620A621G622cWWntWHtHScWW
    3301S720.4267 C663U664A665A666C667*G679G680G681A682G683cWWntWHtHScWW
    1312ZJR0.0000 U616U617A618A619G620*C629G630G631A632G633cWWtHScWW

    3D structures

    Complete motif including flanking bases
    SequenceCounts
    CGAAG*CGGAG3
    UGAAG*UGGAG3
    CAAAC*GGACG2
    CGACG*CCAAG2
    UUAAG*CGGAG2
    CGACC*GCAAG2
    UGGAC*GAAAA1
    CGAAA*UGGAG1
    CUAAC*GGGAG1
    AGGAU*AGAAU1
    GGGAG*CGAAC1
    AAAAG*CGUAU1
    UUAAC*GGGAG1
    CCGAG*CGGCG1
    UUAAC*GAGCG1
    CGACA*UCAAG1
    UGAGG*UGGAG1
    UGAAG*UGGAA1
    CGGCG*CCGAG1
    GAACA*UUAGC1
    UGAAU*AGGAA1
    GAAAC*GCAAC1
    CUAAC*GGACG1
    Non-Watson-Crick part of the motif
    SequenceCounts
    GAA*GGA9
    GAC*CAA5
    UAA*GGA4
    AAA*GAC2
    GGA*GAA2
    AAA*GUA1
    CGA*GGC1
    GGA*AAA1
    UAA*AGC1
    GAG*GGA1
    GGC*CGA1
    AAC*UAG1
    AAA*CAA1
    UAA*GAC1

    Release history

    Release0.6
    Date2012-04-02
    Status> 2 parents

    Parent motifs

    Parent motifCommon motif instancesOnly in IL_87904.1Only in the parent motif
    IL_78374.1
    Compare
    IL_2QBG_024, IL_2QBG_068, IL_1S72_028, IL_2XZM_092, IL_3G78_002, IL_3IWN_002, IL_2A64_005, IL_2A64_006IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_1S72_021, IL_2ZJR_088, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004IL_3O58_085, IL_3PYO_067, IL_3O58_044, IL_3PYO_020
    IL_94031.1
    Compare
    IL_1U6B_002, IL_2QBG_094, IL_2AW7_058, IL_1S72_083, IL_2ZJR_088, IL_2XZM_027IL_2ZJR_012, IL_3UXR_021, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_2QBG_024, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2ZJR_071, IL_3DHS_004
    IL_80407.1
    Compare
    IL_2QBG_019, IL_2ZJR_012, IL_1S72_021, IL_2ZJR_071IL_2AW7_058, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_3DHS_004, IL_2A64_005IL_3PYO_015, IL_3O30_034, IL_3MUR_002
    IL_24982.1
    Compare
    IL_2QWY_001IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004, IL_2A64_005IL_2AW7_030, IL_1S72_055, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_3PYO_049, IL_1FJG_023, IL_1S72_023, IL_2QBG_052, IL_2QWY_007, IL_2XZM_049, IL_2QWY_004
    IL_84234.1
    Compare
    IL_3DHS_004IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_2A64_005

    Children motifs

    Child motifCommon motif instancesOnly in IL_87904.1Only in the child motif
    IL_87904.2
    Compare
    IL_2AW7_058, IL_2ZJR_012, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_2QWY_001, IL_2QBG_024, IL_1S72_028, IL_1S72_021, IL_2XZM_092, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_2QBG_068, IL_1U6B_002, IL_2QBG_094, IL_3U5F_091, IL_2QBG_019, IL_2ZJR_088, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004IL_3UXR_072, IL_3UXR_093, IL_3UXR_021, IL_3UXR_016IL_3V2F_072, IL_3V2F_092, IL_3V2F_021, IL_3V2F_016

    Coloring options:

    Mutual discrepancy heat map legend: