#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_2AW7_0202AW70.19490A16S ribosomal RNAC897G898C899A900A901G902cWWntSH
2 HL_3P22_0033P220.18720CCore ENE hairpin from KSHV PAN RNAC17G18A19A20A21G22cWWntSH
3 HL_1S72_0281S720.00001GNRA (H)0 LSU rRNAG1054G1055U1056A1057A1058C1060cWWntSH
4 HL_2AW7_0102AW70.24960A16S ribosomal RNAC379G380C381A382A383G384cWWntSH
5 HL_2AW7_0072AW70.26560A16S ribosomal RNAU296G297A298G299A300G301cWWntSH
6 HL_1KH6_0021KH60.20080GNRAAJIIIabcC28G29A30A31A32G33cWWntSH
7 HL_1S72_0451S720.16971GNRA (H)0 LSU rRNAC1793G1794G1795A1796A1797G1799cWW
8 HL_1FJG_0201FJG0.23460GNRA (H)A SSU rRNAC897G898C899A900A901G902cWWntSH
9 HL_1S72_0481S720.18520GNRA (H)0 LSU rRNAC1862G1863C1864A1865A1866G1867cWWntSH
10 HL_3O58_0253O580.18461125S ribosomal RNAG1126G1127U1128A1129A1130C1132cWWntSH
11 HL_1S72_0541S720.21880GNRA (H)0 LSU rRNAC2248G2249G2250G2251A2252G2253cWWntSH
12 HL_2GIS_0032GIS0.24720ASAM-I riboswitchG73G74A75A76A77C78cWWntSH
13 HL_1HMH_0021HMH0.24750CHAMMERHEAD RIBOZYME-RNA STRANDC104G21|||LA22|||LA23|||LA24|||LG114cWWntSH
14 HL_1FJG_0271FJG0.26730GNRA (H)A SSU rRNAC1165G1166A1167A1168A1169G1171cWWntSH
15 HL_3DVZ_0013DVZ0.27450ASarcin/Ricin Domain from E. Coli 23 S rRNAC2658G2659A2660G2661A2662G2663cWWntSH
16 HL_3MUR_0013MUR0.33160RC92U mutant c-di-GMP riboswitchC31G32A33A34A35G36cWWntSH
17 HL_1GID_0041GID0.37990GNRABP4-P6 RNA RIBOZYME DOMAING149G150A151A152A153C154cWWntSH
18 HL_1S72_0721S720.37110GNRA (H)9 5S rRNAC89G90C91G92A93G94cWWntSH
19 HL_3IAB_0013IAB0.31750RP3 domain of the RNA component of RNase MRPG78G79A80A81A82C83cWWntSH
20 HL_1RLG_0021RLG0.23510GNRAD25-MERC9G10A11A12A13G14cWWntSH
21 HL_1S72_0201S720.22920GNRA (H)0 LSU rRNAG690G691A692A693A694C695cWWntSH
22 HL_3P22_0073P220.26090GCore ENE hairpin from KSHV PAN RNAC17G18A19A20A21G22cWWntSH
23 HL_1GID_0011GID0.31660AP4-P6 RNA RIBOZYME DOMAING149G150A151A152A153C154cWWntSH
24 HL_1Y0Q_0031Y0Q0.30000AGroup I catalytic intronA101G102U103A104A105U106cWWntSH
25 HL_1U9S_0041U9S0.30470GNRAARIBONUCLEASE PG204G205C206A207A208C209cWWntSH
26 HL_1HMH_0031HMH0.31620GNRAEHAMMERHEAD RIBOZYME-RNA STRANDC104G21|||LA22|||LA23|||LA24|||LG114cWWntSH
27 HL_1M5O_0021M5O0.28260BRNA HAIRPIN RIBOZYMEG74G75A76A77A78C79cWWntSH
28 HL_3AM1_0033AM10.36420GNRABASL-truncated tRNAC45G46A47G48A49G50cWWntSH
29 HL_2ZJR_0052ZJR0.47160GNRA (H)X LSU rRNAC146G147C148A149A150G151cWWntSH
30 HL_2ZJR_0262ZJR0.58232GNRA (H)X LSU rRNAA966G967C968A970A971U973cWWntSH
31 HL_3PYO_0633PYO0.48430A23S ribosomal RNAC2594G2595U2596G2597A2598G2599cWWntSH
32 HL_3NPB_0023NPB0.54840ATL5 RNAC60G61A62A63A64G65ncWWntSH
33 HL_3KTW_0013KTW0.92370GNRACSRP RNAU163G164G165A166G167G168cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG9
GGAAAC6
CGCAAG5
GGUAAGC2
CGAGAG2
UGAGAG1
CGGAACG1
CGGGAG1
CGCGAG1
AGUAAU1
GGCAAC1
AGCUAACU1
CGUGAG1
UGGAGG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA15
GCAA6
GAGA3
GUAAG2
GGAAC1
GGGA1
GCGA1
GUAA1
GCUAAC1
GUGA1
GGAG1

Release history

Release0.1
Date2011-12-08
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in HL_42509.1Only in the child motif
HL_69082.1
Compare
HL_3P22_003, HL_3P22_007, HL_1M5O_002, HL_3PYO_063, HL_3MUR_001, HL_1S72_054, HL_2GIS_003, HL_2AW7_020, HL_1Y0Q_003, HL_3DVZ_001, HL_3AM1_003, HL_3IAB_001, HL_2AW7_007, HL_1GID_004, HL_1U9S_004, HL_1GID_001, HL_1KH6_002, HL_2ZJR_005, HL_1HMH_003, HL_1HMH_002, HL_1S72_020, HL_1S72_048, HL_1RLG_002, HL_1FJG_020, HL_1FJG_027, HL_1S72_072, HL_2AW7_010, HL_3NPB_002HL_2ZJR_026, HL_1S72_045, HL_1S72_028, HL_3KTW_001, HL_3O58_025HL_2OIU_002, HL_2OIU_003, HL_2OIU_001, HL_2OIU_006, HL_2OIU_004, HL_2OIU_005, HL_2XZM_005, HL_1M5O_004, HL_3O58_010, HL_3O58_016, HL_2ZJR_019, HL_2ZJR_014, HL_2ZJR_015, HL_2XXA_002, HL_3PYO_064, HL_2XXA_001, HL_2QBG_016, HL_3PYO_069, HL_2QBG_010, HL_2XZM_031, HL_2QBG_021, HL_1S72_040, HL_3O58_003, HL_1KXK_001, HL_1HMH_001, HL_3PYO_017, HL_3PYO_016, HL_2ZJR_069, HL_2EZ6_001, HL_3KTW_002, HL_2ZJR_062, HL_2ZJR_061, HL_2ZJR_067, HL_1FJG_022, HL_2AW7_019, HL_1FJG_024, HL_2BTE_003, HL_1Q96_002, HL_2AW7_016, HL_2BTE_007, HL_2XZM_027, HL_1MFQ_002, HL_2XZM_023, HL_2XZM_020, HL_3O58_030, HL_3O58_033, HL_2QBG_036, HL_1S72_033, HL_2QBG_033, HL_3PYO_008, HL_1S72_070, HL_1FJG_032, HL_3Q1Q_008, HL_3PYO_020, HL_3MOJ_001, HL_2EZ6_002, HL_2AW7_003, HL_2AW7_004, HL_1X8W_005, HL_3G78_006, HL_3PYO_031, HL_3PYO_034, HL_1FJG_028, HL_1S72_023, HL_2ZJR_047, HL_3IWN_001, HL_3E5C_001, HL_1Q96_003, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_2QBG_049, HL_2QBG_048, HL_2GIS_002, HL_2AW7_032, HL_488D_001, HL_3A3A_003, HL_488D_002, HL_3O30_032, HL_3P22_001, HL_3ADC_003, HL_1JID_001, HL_1S72_015, HL_1S72_017, HL_3P22_005, HL_1FJG_019, HL_2ZJR_056, HL_2HO7_004, HL_3PYO_015, HL_1FJG_010, HL_1FJG_016, HL_1LNG_002, HL_2AW7_022, HL_1Y0Q_007, HL_1Y0Q_004, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3O30_024, HL_3O30_025, HL_3O58_048, HL_3O30_021, HL_2NZ4_008, HL_2NZ4_004, HL_3O30_028, HL_1U6B_001, HL_2PXV_001, HL_1S72_008, HL_1S72_009, HL_3PYO_058, HL_3G78_003, HL_3NKB_002, HL_2QBG_065, HL_2QBG_066, HL_2QBG_060, HL_3Q1Q_003, HL_3Q1Q_001, HL_1X8W_001, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_1UN6_002, HL_3O58_074, HL_1UN6_004, HL_2NZ4_016, HL_1Q96_001, HL_2NZ4_012, HL_2QBG_028, HL_1RLG_001, HL_3E5C_002, HL_1MZP_001, HL_1G1X_003, HL_1G1X_001, HL_2ZJR_031, HL_2QBG_071, HL_1NBS_007, HL_3PYO_047, HL_3CUN_001, HL_3O58_066, HL_3O58_065, HL_1U9S_002, HL_3O58_060, HL_3PYO_046, HL_3D0U_004, HL_2XZM_015, HL_2ZJR_008, HL_2IL9_003, HL_2ZZM_003, HL_1S72_060, HL_3PYO_071, HL_1S72_065, HL_1S72_066, HL_3NPN_001, HL_1MFQ_001, HL_3O30_014
HL_47025.1
Compare
HL_1S72_045, HL_3O58_025HL_3P22_003, HL_3P22_007, HL_1M5O_002, HL_3PYO_063, HL_3MUR_001, HL_1S72_054, HL_2GIS_003, HL_2AW7_020, HL_1Y0Q_003, HL_3DVZ_001, HL_3AM1_003, HL_3IAB_001, HL_2AW7_007, HL_1GID_004, HL_1U9S_004, HL_1GID_001, HL_1KH6_002, HL_2ZJR_005, HL_1HMH_003, HL_1HMH_002, HL_2ZJR_026, HL_1S72_020, HL_3KTW_001, HL_1S72_048, HL_1S72_028, HL_1RLG_002, HL_1FJG_020, HL_1FJG_027, HL_1S72_072, HL_2AW7_010, HL_3NPB_002HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3O30_003, HL_3O58_047, HL_2XZM_035, HL_2XZM_034, HL_1U6B_004, HL_3O58_002, HL_2ZJR_004, HL_1S72_022, HL_3AM1_002, HL_2AW7_013, HL_3Q1Q_002
HL_83094.1
Compare
HL_1S72_028HL_3P22_003, HL_3P22_007, HL_1M5O_002, HL_3PYO_063, HL_3MUR_001, HL_1S72_054, HL_2GIS_003, HL_2AW7_020, HL_1Y0Q_003, HL_3DVZ_001, HL_3AM1_003, HL_3IAB_001, HL_2AW7_007, HL_1GID_004, HL_1U9S_004, HL_1GID_001, HL_3O58_025, HL_1KH6_002, HL_2ZJR_005, HL_1HMH_003, HL_1HMH_002, HL_2ZJR_026, HL_1S72_020, HL_3KTW_001, HL_1S72_045, HL_1S72_048, HL_1RLG_002, HL_1FJG_020, HL_1FJG_027, HL_1S72_072, HL_2AW7_010, HL_3NPB_002
HL_88639.1
Compare
HL_3KTW_001HL_3P22_003, HL_3P22_007, HL_1M5O_002, HL_3PYO_063, HL_3MUR_001, HL_1S72_054, HL_2GIS_003, HL_2AW7_020, HL_1Y0Q_003, HL_3DVZ_001, HL_3AM1_003, HL_3IAB_001, HL_2AW7_007, HL_1GID_004, HL_1U9S_004, HL_1GID_001, HL_3O58_025, HL_1KH6_002, HL_2ZJR_005, HL_1HMH_003, HL_1HMH_002, HL_2ZJR_026, HL_1S72_020, HL_1S72_045, HL_1S72_048, HL_1S72_028, HL_1RLG_002, HL_1FJG_020, HL_1FJG_027, HL_1S72_072, HL_2AW7_010, HL_3NPB_002HL_1FJG_012, HL_2QBG_017, HL_3PYO_043, HL_2AW7_027, HL_3PYO_027
HL_27215.1
Compare
HL_2ZJR_026HL_3P22_003, HL_3P22_007, HL_1M5O_002, HL_3PYO_063, HL_3MUR_001, HL_1S72_054, HL_2GIS_003, HL_2AW7_020, HL_1Y0Q_003, HL_3DVZ_001, HL_3AM1_003, HL_3IAB_001, HL_2AW7_007, HL_1GID_004, HL_1U9S_004, HL_1GID_001, HL_3O58_025, HL_1KH6_002, HL_2ZJR_005, HL_1HMH_003, HL_1HMH_002, HL_1S72_020, HL_3KTW_001, HL_1S72_045, HL_1S72_048, HL_1S72_028, HL_1RLG_002, HL_1FJG_020, HL_1FJG_027, HL_1S72_072, HL_2AW7_010, HL_3NPB_002HL_3PYO_007
Annotations
  • (16)
  • GNRA (H) (10)
  • GNRA (7)
  • Basepair signature
    Heat map statistics
    Min 0.01 | Avg 0.35 | Max 1.00
    Help

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