#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 10 111-112-104-85-6
1 HL_6P2H_0026P2H0.00000APurine riboswitchA59A60C61C62G63U64A65A66A67A68U69cWWncWwcSWcSH
2 HL_3IVN_0033IVN0.23950APurine riboswitchA49A50C51C52G53U54A55A56A57A58U59cWWncSWcSH

3D structures

Complete motif including flanking bases
SequenceCounts
AACCGUAAAAU2
Non-Watson-Crick part of the motif
SequenceCounts
ACCGUAAAA2

Release history

Release3.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-212025-06-18
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-F-F-F-F-cSW-cSH-F
    Heat map statistics
    Min 0.24 | Avg 0.12 | Max 0.24
    Help

    Coloring options:

    HL_6P2H_002:HL_6P2H_002 = 0HL_6P2H_002:HL_3IVN_003 = 0.2395HL_3IVN_003:HL_6P2H_002 = 0.2395HL_3IVN_003:HL_3IVN_003 = 0HL_6P2H_002HL_3IVN_003Discrepancy0.000.050.100.150.20
    Copyright 2025 BGSU RNA group. Page generated in 0.0849 s