#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 91-92-83-74-75-6
1 IL_1GID_0031GID0.00000AP4-P6 RNA RIBOZYME DOMAING112A113A114A115G116*U205A206A207C208cWWtSHtHSncWW
2 IL_1GID_0101GID0.20290BP4-P6 RNA RIBOZYME DOMAING112A113A114A115G116*U205A206A207C208cWWtSHtHScWW
3 IL_2O3V_0022O3V0.32570Decoding loop relatedB+ARNA (23-mer)A38A39A40A41G42*C7G8C9U10cWWcWWacWW
4 IL_3BNQ_0023BNQ0.46320B+AA site of human mitochondrial ribosome, A chainG15C16A17A18G19*C7A8C9C10cWWncWBcWwcWW
5 IL_3BNQ_0083BNQ0.75120D+CA site of human mitochondrial ribosome, B chainG13C14A15A16G17*C7A8C9C10cWWncWwcWwcWW
6 IL_3BNT_0023BNT0.85360Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeG14||||4_665C15||||4_665A16||||4_665A17||||4_665G18||||4_665*C6A7C8C9cWWncWBcWwcWW
7 IL_3BNT_0053BNT0.85360Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeG14C15A16A17G18*C6||||4_665A7||||4_665C8||||4_665C9||||4_665cWWncWBcWwcWW
8 IL_3FTM_0013FTM0.88300B+ARNA (12-mer)C-1G1G2A3A4*U46G47A48G49cWWntSHcWW
9 IL_3G78_0103G780.90770AGroup II catalytic intron D1-D4-1C190A191A192A193G194*U172G173A174G175cWWtSHtHScWW
10 IL_3LOA_0013LOA1.18910UAA/GAN variationB+ARNA (23-mer)G1497U1498A1499A1500C1501*G1401C1402C1403C1404cWWncWWcWW
11 IL_429D_002429D1.35941C+DRNA (13-mer) + RNA (11-mer)C122C123A125G126C127*G143G144A145G146cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCAAG*CACC4
GAAAG*UAAC2
AAAAG*CGCU1
CGGAA*UGAG1
CAAAG*UGAG1
GUAAC*GCCC1
CCGAGC*GGAG1
Non-Watson-Crick part of the motif
SequenceCounts
CAA*AC4
AAA*AA2
AAA*GC1
GGA*GA1
AAA*GA1
UAA*CC1
CGAG*GA1
Annotations
  • (7)
  • Tandem non-canonical cWW pairs (2)
  • Decoding loop related (1)
  • UAA/GAN variation (1)
  • Basepair signature
    Heat map statistics
    Min 0.00 | Avg 0.63 | Max 1.36
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