Motif IL_35110.4 Version IL_35110.4 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13	1-13	2-12	3-11	4-5	5-10	6-9	7-8
1	IL_4WF9_100	4WF9	0.3497	Sarcin-Ricin target in LSU H95; G-bulge	X	LSU rRNA	U	2679	U	2680	A	2681	G	2682	U	2683	A	2684	C	2685	*	G	2690	G	2691	A	2692	C	2693	C	2694	G	2695	cWW				tWH	tHS	cWW
2	IL_4Y4O_278	4Y4O	0.3539	Sarcin-Ricin target in LSU H95; G-bulge	2A	LSU rRNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668	cWW			cSH	tWH	tHS	cWW
3	IL_5J7L_346	5J7L	0.3154	Sarcin-Ricin target in LSU H95; G-bulge	DA	LSU rRNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668	cWW			cSH	tWH	tHS	cWW
4	IL_7A0S_094	7A0S	0.3216	Sarcin-Ricin target in LSU H95; G-bulge	X	LSU rRNA	C	2631	U	2632	A	2633	G	2634	U	2635	A	2636	C	2637	*	G	2642	G	2643	A	2644	C	2645	C	2646	G	2647	cWW			cSH	tWH	tHS	cWW
5	IL_4V9F_019	4V9F	0.2599	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	C	585	C	586	A	587	G	588	U	589	A	590	A	591	*	U	567	G	568	A	569	C	570	C	571	G	572	cWW	cWB		cSH	tWH	tHS	cWW
6	IL_1NBS_007	1NBS	0.2121	7x6 Sarcin-Ricin; G-bulge	B	RNase P class B	U	165	G	166	A	167	G	168	U	169	A	170	U	171	*	A	138	A	139	A	140	A	141	A	142	A	143	cWW	ntSH	tHH	cSH	ntWH	tHS	cWW
7	IL_4V9F_106	4V9F	0.2048	7x6 Sarcin-Ricin; G-bulge	9	5S rRNA	G	75	G	76	A	77	G	78	U	79	A	80	C	81	*	G	101	G	102	A	103	A	104	A	105	U	106	ncWW	tSH	tHH	cSH	tWH	tHS	cWW
8	IL_4V9F_092	4V9F	0.2133	Sarcin-Ricin target in LSU H95; G-bulge	0	LSU rRNA	A	2689	U	2690	A	2691	G	2692	U	2693	A	2694	C	2695	*	G	2700	G	2701	A	2702	A	2703	C	2704	U	2705	cWW	tSH	tHH	cSH	tWH	tHS	cWW
9	IL_5TBW_061	5TBW	0.2220	7x6 Sarcin-Ricin; G-bulge	1	LSU rRNA	G	1444	U	1445	A	1446	G	1447	U	1448	A	1449	G	1450	*	C	2354	G	2355	A	2356	A	2357	A	2358	C	2359	cWW	tSH	tHH	cSH	tWH	tHS	cWW
10	IL_4V9F_049	4V9F	0.2072	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	A	1367	U	1368	A	1369	G	1370	U	1371	A	1372	G	1373	*	U	2052	G	2053	A	2054	A	2055	C	2056	U	2057	cWW	tSH	tHH	cSH	tWH	tHS	cWW
11	IL_5J7L_251	5J7L	0.0000	7x6 Sarcin-Ricin; G-bulge	DA	LSU rRNA	C	239	C	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	C	257	G	258	cWW	tSH	tHH	cSH	tWH	tHS	cWW
12	IL_4V9F_007	4V9F	0.1159	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	U	210	U	211	A	212	G	213	U	214	A	215	A	216	*	U	224	G	225	A	226	A	227	C	228	G	229	cWW	tSH	tHH	cSH	tWH	tHS	cWW
13	IL_4Y4O_185	4Y4O	0.1225	7x6 Sarcin-Ricin; G-bulge	2A	LSU rRNA	U	239	G	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	A	257	G	258	cWW	tSH	tHH	cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAGUAC*GGACCG	3
UUAGUAC*GGACCG	1
CCAGUAA*UGACCG	1
UGAGUAU*AAAAAA	1
GGAGUAC*GGAAAU	1
AUAGUAC*GGAACU	1
GUAGUAG*CGAAAC	1
AUAGUAG*UGAACU	1
CCAGUAG*CGAACG	1
UUAGUAA*UGAACG	1
UGAGUAG*CGAAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGUA*GACC	4
UAGUA*GAAC	3
GAGUA*GAAA	2
CAGUA*GACC	1
GAGUA*AAAA	1
UAGUA*GAAA	1
CAGUA*GAAC	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 7x6 Sarcin-Ricin; G-bulge (8)
Sarcin-Ricin target in LSU H95; G-bulge (5)
Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.09 | Avg 0.25 | Max 0.44

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