Motif IL_36534.1 Version IL_36534.1 of this group appears in releases 0.1 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 5-6 | 5-10 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_004 | 2ZJR | 0.3981 | 1 | Kink-turn (H) | X | A | 80 | C | 81 | G | 82 | A | 83 | G | 84 | * | C | 96 | U | 97 | U | 98 | G | 100 | A | 101 | C | 102 | U | 103 | cWW | ncWB | tSs | ntHS | cWW | ntsS | ||
| 2 | IL_1S72_032 | 1S72 | 0.2479 | 2 | Kink-turn (H) | 0 | C | 936 | C | 937 | G | 938 | A | 939 | G | 940 | * | C | 1026 | G | 1027 | U | 1028 | G | 1031 | A | 1032 | C | 1033 | G | 1034 | cWW | cWB | ntSs | tHS | ncWW | |||
| 3 | IL_1S72_004 | 1S72 | 0.0000 | 1 | Kink-turn (H) | 0 | G | 77 | G | 78 | G | 79 | A | 80 | G | 81 | * | C | 93 | G | 94 | A | 95 | G | 97 | A | 98 | A | 99 | C | 100 | cWW | tSH | ntSH | ntSs | tHS | cWW | ntsS | |
| 4 | IL_1S72_048 | 1S72 | 0.3472 | 1 | Kink-turn (H) | 0 | U | 1338 | G | 1339 | G | 1340 | A | 1341 | C | 1342 | * | G | 1312 | A | 1313 | U | 1314 | G | 1316 | A | 1317 | A | 1318 | G | 1319 | cWW | tSH | tSH | ntSs | tHS | cWW | ||
| 5 | IL_3F1H_004 | 3F1H | 0.4805 | 1 | A | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | * | C | 97 | G | 98 | U | 99 | G | 102 | A | 103 | U | 104 | C | 105 | cWW | tSH | ntSs | tHS | cWW | tsS | |||
| 6 | IL_3F1H_045 | 3F1H | 0.4826 | 1 | A | U | 1234 | G | 1235 | G | 1236 | A | 1237 | G | 1238 | * | C | 1208 | G | 1209 | A | 1210 | G | 1212 | A | 1213 | A | 1214 | G | 1215 | cWW | tSH | ntSH | tHS | cWW | ncSH | |||
| 7 | IL_2ZJR_043 | 2ZJR | 0.4492 | 1 | Kink-turn (H) | X | U | 1247 | G | 1248 | G | 1249 | A | 1250 | G | 1251 | * | C | 1221 | G | 1222 | G | 1223 | G | 1225 | A | 1226 | A | 1227 | G | 1228 | cWW | tSH | tSH | tHS | cWW | |||
| 8 | IL_2GIS_002 | 2GIS | 0.3897 | 1 | A | U | 17 | G | 18 | G | 19 | A | 20 | G | 21 | * | C | 31 | G | 32 | A | 33 | G | 35 | A | 36 | A | 37 | A | 38 | cWW | tSH | tSH | ntSs | tHS | cWW | |||
| 9 | IL_3F1H_084 | 3F1H | 0.5031 | 1 | A | G | 2155 | G | 2156 | G | 2157 | A | 2158 | G | 2159 | * | C | 2129 | U | 2130 | G | 2131 | G | 2133 | A | 2134 | A | 2135 | C | 2136 | cWW | tSH | ntSH | ntSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGAG*CUUUGACU | 1 |
| CCGAG*CGUUUGACG | 1 |
| GGGAG*CGAAGAAC | 1 |
| UGGAC*GAUGGAAG | 1 |
| GGGAG*CGUGGAUC | 1 |
| UGGAG*CGAUGAAG | 1 |
| UGGAG*CGGAGAAG | 1 |
| UGGAG*CGAUGAAA | 1 |
| GGGAG*CUGUGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*GAUGAA | 2 |
| CGA*UUUGAC | 1 |
| CGA*GUUUGAC | 1 |
| GGA*GAAGAA | 1 |
| GGA*AUGGAA | 1 |
| GGA*GUGGAU | 1 |
| GGA*GGAGAA | 1 |
| GGA*UGUGAA | 1 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 |
|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
| Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_36534.1 | Only in the child motif |
|---|---|---|---|
| IL_89586.1 Compare | IL_2GIS_002, IL_1S72_048 | IL_1S72_032, IL_3F1H_084, IL_2ZJR_043, IL_3F1H_004, IL_2ZJR_004, IL_1S72_004, IL_3F1H_045 | IL_1T0K_001 |
| IL_01955.1 Compare | IL_1S72_032, IL_2ZJR_004 | IL_3F1H_084, IL_2ZJR_043, IL_3F1H_004, IL_2GIS_002, IL_1S72_048, IL_3F1H_045, IL_1S72_004 | |
| IL_34305.1 Compare | IL_2ZJR_043 | IL_1S72_032, IL_3F1H_084, IL_3F1H_004, IL_2GIS_002, IL_2ZJR_004, IL_1S72_048, IL_3F1H_045, IL_1S72_004 | IL_2QBG_047 |
| IL_51412.1 Compare | IL_1S72_004 | IL_1S72_032, IL_3F1H_084, IL_2ZJR_043, IL_3F1H_004, IL_2GIS_002, IL_2ZJR_004, IL_1S72_048, IL_3F1H_045 | IL_3PYO_004 |
- Annotations
-
- Kink-turn (H) (5)
- (4)
- Basepair signature
- Heat map statistics
- Min 0.16 | Avg 0.37 | Max 0.58
Coloring options: