Motif IL_01955.1 Version IL_01955.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-7 | 4-9 | 5-6 | 5-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_004 | 2ZJR | 0.0000 | 1 | Kink-turn (H) | X | A | 80 | C | 81 | G | 82 | A | 83 | G | 84 | * | C | 96 | U | 97 | U | 98 | G | 100 | A | 101 | C | 102 | U | 103 | cWW | ncWB | tSs | ntHS | cWW | ntsS |
| 2 | IL_1S72_032 | 1S72 | 0.5216 | 2 | Kink-turn (H) | 0 | C | 936 | C | 937 | G | 938 | A | 939 | G | 940 | * | C | 1026 | G | 1027 | U | 1028 | G | 1031 | A | 1032 | C | 1033 | G | 1034 | cWW | cWB | ntSs | tHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGAG*CUUUGACU | 1 |
| CCGAG*CGUUUGACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGA*UUUGAC | 1 |
| CGA*GUUUGAC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_01955.1 | Only in the parent motif |
|---|---|---|---|
| IL_36534.1 Compare | IL_1S72_032, IL_2ZJR_004 | IL_3F1H_084, IL_2ZJR_043, IL_3F1H_004, IL_2GIS_002, IL_1S72_048, IL_3F1H_045, IL_1S72_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_01955.1 | Only in the child motif |
|---|---|---|---|
| IL_65553.1 Compare | IL_1S72_032, IL_2ZJR_004 | IL_3U5H_064, IL_3UXR_004, IL_2QBG_047, IL_2ZJR_043, IL_3U5F_019, IL_3UXR_044, IL_1S72_048, IL_4A1B_062, IL_3GX5_002, IL_2AW7_014, IL_1T0K_001, IL_3NPB_003, IL_1S72_004, IL_3RW6_006, IL_2XZM_017, IL_3RW6_002, IL_3U5F_051 |
- Annotations
-
- Kink-turn (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.52 | Avg 0.26 | Max 0.52
Coloring options: