Motif IL_51629.1 Version IL_51629.1 of this group appears in releases 3.77 to 3.79
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V88_476 | 4V88 | 0.5501 | 0 | Other IL | A6 | SSU rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW | |
2 | IL_2ET8_003 | 2ET8 | 0.6131 | 1 | Decoding loop related | A+B | RNA (22-mer) | G | 15 | A | 17 | G | 18 | * | C | 29 | A | 30 | C | 31 | cWW | cWW | |
3 | IL_3LOA_003 | 3LOA | 0.7696 | 1 | Decoding loop with one bulged A | B+A | RNA (23-mer) | G | 1491 | A | 1493 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
4 | IL_5M0H_002 | 5M0H | 0.5502 | 2 | Multiple bulged bases, near cWW | A | ASH1 E3 (42 nt-TL/TLR) | G | 8 | U | 11 | C | 12 | * | G | 34 | A | 35 | C | 36 | ncWW | cWW | cWW |
5 | IL_4WF9_018 | 4WF9 | 0.5167 | 0 | Isolated non-canonical cWW | X | LSU rRNA | U | 705 | U | 706 | G | 707 | * | U | 638 | U | 639 | G | 640 | cWW | cWW | |
6 | IL_4KYY_002 | 4KYY | 0.5156 | 0 | Isolated non-canonical cWW | B+A | RNA 17-mer | U | 8 | U | 9 | G | 10 | * | U | 8 | U | 9 | G | 10 | cWW | cWW | |
7 | IL_7A0S_107 | 7A0S | 0.4990 | 0 | Isolated non-canonical cWW | Y | 5S rRNA | U | 82 | C | 83 | G | 84 | * | C | 97 | C | 98 | G | 99 | cWW | ncBW | cWW |
8 | IL_4V88_470 | 4V88 | 0.4401 | 0 | Isolated non-canonical cWW | A6 | SSU rRNA | U | 1665 | U | 1666 | A | 1667 | * | U | 1734 | U | 1735 | G | 1736 | cWW | cWW | |
9 | IL_4Y1M_005 | 4Y1M | 0.4042 | 0 | Isolated non-canonical cWW | B | E. coli yybP-ykoY riboswitch | A | 103 | U | 104 | A | 105 | * | U | 4 | U | 5 | U | 6 | cWW | ncWw | cWW |
10 | IL_8AF0_002 | 8AF0 | 0.3318 | 0 | Isolated cWH basepair | D+C | RNA (19-mer) | G | 34 | U | 35 | C | 36 | * | G | 34 | U | 35 | C | 36 | cWW | cHW | cWW |
11 | IL_5TBW_016 | 5TBW | 0.4084 | 0 | Isolated non-canonical cWW | 1 | LSU rRNA | U | 429 | U | 430 | U | 431 | * | A | 628 | U | 629 | A | 630 | cWW | cWW | |
12 | IL_7MLW_006 | 7MLW | 0.4345 | 0 | Isolated tWW contact | F | Guanidine-I riboswitch | C | 71 | U | 72 | U | 73 | * | A | 92 | C | 93 | G | 94 | cWW | cWW | |
13 | IL_1WNE_001 | 1WNE | 0.3359 | 0 | B+C | RNA (8-mer) + RNA (5-mer) | G | 906 | G | 907 | C | 908 | * | G | 917 | C | 918 | C | 919 | cWW | cWW | ||
14 | IL_4WZM_001 | 4WZM | 0.3709 | 0 | Isolated cWH basepair | B+C | RNA template + RNA primer | G | 906 | G | 907 | C | 908 | * | G | 917 | C | 918 | C | 919 | cWW | ncHW | cWW |
15 | IL_2R8S_005 | 2R8S | 0.4598 | 5 | cWH basepair with bulged bases | R | P4-P6 RNA RIBOZYME DOMAIN | U | 182 | A | 187 | C | 189 | * | G | 134 | U | 135 | A | 136 | cWW | cHW | cWW |
16 | IL_6F4H_001 | 6F4H | 0.2616 | 0 | Isolated cWH basepair | D | U1-SL2 | G | 1 | G | 2 | C | 3 | * | G | 20 | C | 21 | C | 22 | cWW | ncHW | cWW |
17 | IL_4V88_427 | 4V88 | 0.2279 | 0 | Isolated cWH basepair | A6 | SSU rRNA | U | 822 | G | 823 | G | 824 | * | C | 848 | C | 849 | A | 850 | cWW | ncHW | cWW |
18 | IL_3FOZ_001 | 3FOZ | 0.2559 | 0 | Isolated cWH basepair | D | tRNA(Phe) | G | 63 | A | 64 | G | 65 | * | C | 49 | U | 50 | U | 51 | cWW | cWW | |
19 | IL_4V88_444 | 4V88 | 0.3086 | 0 | Isolated non-canonical cWW pair | A6 | SSU rRNA | G | 1464 | C | 1465 | G | 1466 | * | C | 1173 | C | 1174 | U | 1175 | cWW | ncBW | cWW |
20 | IL_3R1D_012 | 3R1D | 0.2953 | 0 | E | RNA (11-mer) | C | 5 | G | 6||A | G | 7||A | * | C | 5||||2_655 | G | 6||A||2_655 | G | 7||A||2_655 | cWW | cWW | ||
21 | IL_4P3U_001 | 4P3U | 0.3763 | 0 | Isolated non-canonical cWW | A+B | RNA (23-mer) | G | 5 | U | 6 | C | 7 | * | G | 42 | U | 43 | C | 44 | cWW | cWW | |
22 | IL_4WF9_055 | 4WF9 | 0.3432 | 0 | X | LSU rRNA | G | 1465 | G | 1466 | G | 1467 | * | C | 1622 | U | 1623 | C | 1624 | cWW | cWW | ||
23 | IL_7A0S_042 | 7A0S | 0.3560 | 0 | Isolated non-canonical cWW | X | LSU rRNA | C | 1252 | C | 1253 | G | 1254 | * | C | 1218 | C | 1219 | G | 1220 | cWW | ncBW | cWW |
24 | IL_4V88_453 | 4V88 | 0.2860 | 0 | Isolated cWH basepair | A6 | SSU rRNA | U | 1290 | G | 1291 | G | 1292 | * | C | 1323 | G | 1324 | A | 1325 | cWW | cHW | cWW |
25 | IL_7A0S_026 | 7A0S | 0.3600 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | C | 864 | A | 865 | U | 866 | * | A | 936 | C | 937 | G | 938 | cWW | cWW | cWW |
26 | IL_4V88_405 | 4V88 | 0.2775 | 0 | Isolated cWH basepair | A6 | SSU rRNA | G | 389 | G | 390 | A | 391 | * | U | 406 | A | 407 | C | 408 | cWW | cHW | cWW |
27 | IL_5TBW_110 | 5TBW | 0.2603 | 0 | Isolated non-canonical cWW pair | 1 | LSU rRNA | C | 2889 | A | 2890 | U | 2891 | * | G | 2912 | C | 2913 | G | 2914 | cWW | ncWWa | cWW |
28 | IL_4KR9_001 | 4KR9 | 0.2774 | 0 | M | RNA (39-MER) | G | 6 | A | 7 | U | 8 | * | G | 28 | U | 29 | C | 30 | cWW | cWW | cWW | |
29 | IL_4KR9_002 | 4KR9 | 0.2795 | 0 | X | RNA (39-MER) | G | 6 | A | 7 | U | 8 | * | G | 28 | U | 29 | C | 30 | cWW | cWW | cWW | |
30 | IL_2ZNI_001 | 2ZNI | 0.2469 | 0 | C | bacterial tRNA | G | 29 | G | 30 | A | 31 | * | U | 39 | U | 40 | C | 41 | cWW | ncWWa | cWW | |
31 | IL_5F5F_003 | 5F5F | 0.2547 | 0 | Isolated cWH basepair | F | RNA (20-mer) | U | 5 | G | 6 | C | 7 | * | G | 14 | G | 15 | A | 16 | cWW | cHW | cWW |
32 | IL_5F5F_001 | 5F5F | 0.2761 | 0 | Isolated cWH basepair | B | RNA (20-mer) | U | 5 | G | 6 | C | 7 | * | G | 14 | G | 15 | A | 16 | cWW | cHW | cWW |
33 | IL_3D0M_002 | 3D0M | 0.2082 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7||||16_545 | G | 8||||16_545 | A | 9||||16_545 | * | U | 10 | G | 11 | A | 12 | cWW | cHW | ncWW |
34 | IL_3D0M_001 | 3D0M | 0.2082 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7 | G | 8 | A | 9 | * | U | 10||||16_545 | G | 11||||16_545 | A | 12||||16_545 | cWW | cHW | ncWW |
35 | IL_2H1M_003 | 2H1M | 0.1527 | 0 | Isolated cWH basepair | B+A | RNA (16-mer) | A | 21 | G | 22 | U | 23 | * | A | 10 | A | 11 | U | 12 | cWW | ncHW | cWW |
36 | IL_2H1M_002 | 2H1M | 0.1752 | 0 | Isolated cWH basepair | A+B | RNA (16-mer) | A | 5 | G | 6 | U | 7 | * | A | 26 | A | 27 | U | 28 | cWW | ncHW | cWW |
37 | IL_5J7L_011 | 5J7L | 0.1599 | 0 | Isolated cWH basepair | AA | SSU rRNA | C | 176 | G | 177 | C | 178 | * | G | 144 | G | 145 | G | 146 | cWW | cHW | cWW |
38 | IL_4WF9_045 | 4WF9 | 0.1670 | 0 | Isolated cWH basepair | X | LSU rRNA | C | 1277 | G | 1278 | C | 1279 | * | G | 1243 | G | 1244 | G | 1245 | cWW | cHW | cWW |
39 | IL_3R1D_002 | 3R1D | 0.1372 | 0 | Isolated cWH basepair | A+B | RNA (11-mer) | C | 5 | G | 6 | G | 7 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
40 | IL_4KQ0_005 | 4KQ0 | 0.0027 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 3 | G | 4 | G | 5 | * | C | 15 | G | 16 | G | 17 | cWW | cHW | cWW |
41 | IL_4KQ0_001 | 4KQ0 | 0.0000 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 3 | G | 4 | G | 5 | * | C | 15 | G | 16 | G | 17 | cWW | cHW | cWW |
42 | IL_6IA2_003 | 6IA2 | 0.1331 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) | C | 9 | G | 10||A | G | 11 | * | C | 9 | G | 10||A | G | 11||A | cWW | cHW | cWW |
43 | IL_4J50_001 | 4J50 | 0.1434 | 0 | Isolated cWH basepair | B+A | RNA (19-mer) | C | 13 | A | 14 | G | 15 | * | C | 7 | A | 8 | G | 9 | cWW | cWW | |
44 | IL_4J50_003 | 4J50 | 0.1435 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) | C | 13 | A | 14 | G | 15 | * | C | 7 | A | 8 | G | 9 | cWW | cWW | |
45 | IL_4KQ0_002 | 4KQ0 | 0.1587 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 6 | G | 7 | G | 8 | * | C | 12 | G | 13 | G | 14 | cWW | cHW | cWW |
46 | IL_4KQ0_004 | 4KQ0 | 0.1598 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 6 | G | 7 | G | 8 | * | C | 12 | G | 13 | G | 14 | cWW | cHW | cWW |
47 | IL_6RA4_002 | 6RA4 | 0.1762 | 0 | Isolated cWH basepair | L+M | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403 | G | 404 | A | 405 | cWW | cHW | cWW |
48 | IL_3W3S_003 | 3W3S | 0.1531 | 0 | Isolated cWH basepair | B | Selenocysteine transfer RNA | G | 47|||A | G | 47|||B | U | 47|||C | * | A | 47|||N | G | 47|||O | C | 47|||P | cWW | cHW | cWW |
49 | IL_3CZW_001 | 3CZW | 0.1332 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7 | G | 8 | A | 9 | * | U | 10||||2_555 | G | 11||||2_555 | A | 12||||2_555 | cWW | cHW | cWW |
50 | IL_3CZW_002 | 3CZW | 0.1332 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7||||2_555 | G | 8||||2_555 | A | 9||||2_555 | * | U | 10 | G | 11 | A | 12 | cWW | cHW | cWW |
51 | IL_3SJ2_003 | 3SJ2 | 0.1536 | 0 | Isolated cWH basepair | B+A | RNA (17-mer) | C | 7 | G | 8 | G | 9 | * | C | 13 | G | 14 | G | 15 | cWW | cHW | cWW |
52 | IL_3R1C_018 | 3R1C | 0.1317 | 0 | Isolated cWH basepair | Q+R | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cHW | cWW |
53 | IL_3R1C_012 | 3R1C | 0.1585 | 0 | Isolated cWH basepair | L+K | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
54 | IL_3R1C_011 | 3R1C | 0.1608 | 0 | Isolated cWH basepair | K+L | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
55 | IL_3R1C_017 | 3R1C | 0.1487 | 0 | Isolated cWH basepair | R+Q | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cHW | cWW |
56 | IL_3SJ2_002 | 3SJ2 | 0.1452 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) + RNA (17-mer) | C | 10 | G | 11 | G | 12 | * | C | 10 | G | 11 | G | 12 | cWW | cHW | cWW |
57 | IL_3R1C_031 | 3R1C | 0.1265 | 0 | Isolated cWH basepair | F+E | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cHW | cWW |
58 | IL_4E5C_001 | 4E5C | 0.1282 | 0 | Isolated cWH basepair | B+A | RNA (19-mer) | C | 9 | G | 10 | G | 11 | * | C | 9 | G | 10 | G | 11 | cWW | cHW | cWW |
59 | IL_3SJ2_001 | 3SJ2 | 0.1414 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) + RNA (17-mer) | C | 7 | G | 8 | G | 9 | * | C | 13 | G | 14 | G | 15 | cWW | cHW | cWW |
60 | IL_3R1C_032 | 3R1C | 0.1159 | 0 | Isolated cWH basepair | F+E | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
61 | IL_4KQ0_003 | 4KQ0 | 0.1314 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 9 | G | 10 | G | 11 | * | C | 9 | G | 10 | G | 11 | cWW | cHW | cWW |
62 | IL_1L9A_003 | 1L9A | 0.1668 | 0 | B | signal recognition particle RNA S domain | C | 123 | G | 124 | G | 125 | * | C | 225 | U | 226 | G | 227 | cWW | ncWW | cWW | |
63 | IL_406D_002 | 406D | 0.1943 | 0 | Isolated cWH basepair | E+A | RNA (17-mer) | U | 25||A | G | 26||A | G | 27||A | * | U | 8||A | G | 9||A | G | 10||A | cWW | ncHW | cWW |
64 | IL_364D_004 | 364D | 0.3222 | 0 | Self complementary | C+B | RNA (31-mer) | U | 95 | G | 96 | C | 97 | * | G | 79 | U | 80 | G | 81 | cWW | ncWW | cWW |
65 | IL_5ZTM_001 | 5ZTM | 0.3094 | 0 | Isolated non-canonical cWW pair | C | non-coding mRNA sequence roX2 | U | 118 | A | 119 | G | 120 | * | C | 162 | C | 163 | G | 164 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGG*CGG | 18 |
UGA*UGA | 5 |
GGC*GCC | 3 |
GAAG*CAC | 2 |
UUG*UUG | 2 |
GUC*GUC | 2 |
GAU*GUC | 2 |
UGC*GGA | 2 |
AGU*AAU | 2 |
CGC*GGG | 2 |
CAG*CAG | 2 |
CAG*UAG | 1 |
GAAUC*GAC | 1 |
UCG*CCG | 1 |
UUA*UUG | 1 |
AUA*UUU | 1 |
UUU*AUA | 1 |
CUU*ACG | 1 |
UAAUAAGC*GUA | 1 |
UGG*CCA | 1 |
GAG*CUU | 1 |
GCG*CCU | 1 |
GGG*CUC | 1 |
CCG*CCG | 1 |
UGG*CGA | 1 |
CAU*ACG | 1 |
GGA*UAC | 1 |
CAU*GCG | 1 |
GGA*UUC | 1 |
GGU*AGC | 1 |
CGG*CUG | 1 |
UGG*UGG | 1 |
UGC*GUG | 1 |
UAG*CCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*G | 30 |
U*U | 7 |
G*C | 4 |
G*U | 4 |
A*A | 3 |
C*C | 3 |
A*U | 3 |
A*C | 3 |
G*A | 3 |
AA*A | 2 |
AAU*A | 1 |
U*C | 1 |
AAUAAG*U | 1 |
- Annotations
-
- Isolated cWH basepair (39)
- Isolated non-canonical cWW (8)
- (7)
- Isolated non-canonical cWW pair (4)
- Decoding loop related (1)
- cWH basepair with bulged bases (1)
- Self complementary (1)
- Decoding loop with one bulged A (1)
- Other IL (1)
- Multiple bulged bases, near cWW (1)
- Isolated tWW contact (1)
- Basepair signature
- cWW-cHW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.33 | Max 1.00
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