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Motif IL_51629.1 Version IL_51629.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_4V88_4764V880.55010Other ILA6 SSU rRNAC1711A1712G1713*U1688A1689G1690ncWWncWW
2 IL_2ET8_0032ET80.61311Decoding loop relatedA+BRNA (22-mer)G15A17G18*C29A30C31cWWcWW
3 IL_3LOA_0033LOA0.76961Decoding loop with one bulged AB+ARNA (23-mer)G1491A1493G1494*C1407A1408C1409cWWcWW
4 IL_5M0H_0025M0H0.55022Multiple bulged bases, near cWWAASH1 E3 (42 nt-TL/TLR)G8U11C12*G34A35C36ncWWcWWcWW
5 IL_4WF9_0184WF90.51670Isolated non-canonical cWW pairX LSU rRNAU705U706G707*U638U639G640cWWcWW
6 IL_4KYY_0024KYY0.51560Isolated non-canonical cWW pairB+ARNA 17-merU8U9G10*U8U9G10cWWcWW
7 IL_7A0S_1077A0S0.49900Isolated non-canonical cWW pairY 5S rRNAU82C83G84*C97C98G99cWWncBWcWW
8 IL_4V88_4704V880.44010Isolated non-canonical cWW pairA6 SSU rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
9 IL_4Y1M_0054Y1M0.40420Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchA103U104A105*U4U5U6cWWncWwcWW
10 IL_8AF0_0028AF00.33180Isolated cWH basepairD+CRNA (19-mer)G34U35C36*G34U35C36cWWcHWcWW
11 IL_5TBW_0165TBW0.40840Isolated non-canonical cWW pair1 LSU rRNAU429U430U431*A628U629A630cWWcWW
12 IL_7MLW_0067MLW0.43450Isolated tWW contactFGuanidine-I riboswitchC71U72U73*A92C93G94cWWcWW
13 IL_1WNE_0011WNE0.33590B+CRNA (8-mer) + RNA (5-mer)G906G907C908*G917C918C919cWWcWW
14 IL_4WZM_0014WZM0.37090Isolated cWH basepairB+CRNA template + RNA primerG906G907C908*G917C918C919cWWncHWcWW
15 IL_2R8S_0052R8S0.45985cWH basepair with bulged basesRP4-P6 RNA RIBOZYME DOMAINU182A187C189*G134U135A136cWWcHWcWW
16 IL_6F4H_0016F4H0.26160Isolated cWH basepairDU1-SL2G1G2C3*G20C21C22cWWncHWcWW
17 IL_4V88_4274V880.22790Isolated cWH basepairA6 SSU rRNAU822G823G824*C848C849A850cWWncHWcWW
18 IL_3FOZ_0013FOZ0.25590Isolated cWH basepairDtRNA(Phe)G63A64G65*C49U50U51cWWcWW
19 IL_4V88_4444V880.30860Isolated non-canonical cWW pairA6 SSU rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
20 IL_3R1D_0123R1D0.29530ERNA (11-mer)C5G6||AG7||A*C5||||2_655G6||A||2_655G7||A||2_655cWWcWW
21 IL_4P3U_0014P3U0.37630Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
22 IL_4WF9_0554WF90.34320X LSU rRNAG1465G1466G1467*C1622U1623C1624cWWcWW
23 IL_7A0S_0427A0S0.35600Isolated non-canonical cWW pairX LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
24 IL_4V88_4534V880.28600Isolated cWH basepairA6 SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
25 IL_7A0S_0267A0S0.36000Isolated non-canonical cWW pairX LSU rRNAC864A865U866*A936C937G938cWWcWWcWW
26 IL_4V88_4054V880.27750Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
27 IL_5TBW_1105TBW0.26030Isolated non-canonical cWW pair1 LSU rRNAC2889A2890U2891*G2912C2913G2914cWWncWWacWW
28 IL_4KR9_0014KR90.27740MRNA (39-MER)G6A7U8*G28U29C30cWWcWWcWW
29 IL_4KR9_0024KR90.27950XRNA (39-MER)G6A7U8*G28U29C30cWWcWWcWW
30 IL_2ZNI_0012ZNI0.24690Cbacterial tRNAG29G30A31*U39U40C41cWWncWWacWW
31 IL_5F5F_0035F5F0.25470Isolated cWH basepairFRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
32 IL_5F5F_0015F5F0.27610Isolated cWH basepairBRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
33 IL_3D0M_0023D0M0.20820Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
34 IL_3D0M_0013D0M0.20820Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
35 IL_2H1M_0032H1M0.15270Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
36 IL_2H1M_0022H1M0.17520Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
37 IL_5J7L_0115J7L0.15990Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
38 IL_4WF9_0454WF90.16700Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
39 IL_3R1D_0023R1D0.13720Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
40 IL_4KQ0_0054KQ00.00270Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
41 IL_4KQ0_0014KQ00.00000Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
42 IL_6IA2_0036IA20.13310Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
43 IL_4J50_0014J500.14340Isolated cWH basepairB+ARNA (19-mer)C13A14G15*C7A8G9cWWcWW
44 IL_4J50_0034J500.14350Isolated cWH basepairA+BRNA (19-mer)C13A14G15*C7A8G9cWWcWW
45 IL_4KQ0_0024KQ00.15870Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
46 IL_4KQ0_0044KQ00.15980Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
47 IL_6RA4_0026RA40.17620Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
48 IL_3W3S_0033W3S0.15310Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
49 IL_3CZW_0013CZW0.13320Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
50 IL_3CZW_0023CZW0.13320Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
51 IL_3SJ2_0033SJ20.15360Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
52 IL_3R1C_0183R1C0.13170Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
53 IL_3R1C_0123R1C0.15850Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
54 IL_3R1C_0113R1C0.16080Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
55 IL_3R1C_0173R1C0.14870Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
56 IL_3SJ2_0023SJ20.14520Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
57 IL_3R1C_0313R1C0.12650Isolated cWH basepairF+ERNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
58 IL_4E5C_0014E5C0.12820Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
59 IL_3SJ2_0013SJ20.14140Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
60 IL_3R1C_0323R1C0.11590Isolated cWH basepairF+ERNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
61 IL_4KQ0_0034KQ00.13140Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
62 IL_1L9A_0031L9A0.16680Bsignal recognition particle RNA S domainC123G124G125*C225U226G227cWWncWWcWW
63 IL_406D_002406D0.19430Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
64 IL_364D_004364D0.32220Self complementaryC+BRNA (31-mer)U95G96C97*G79U80G81cWWncWWcWW
65 IL_5ZTM_0015ZTM0.30940Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2U118A119G120*C162C163G164cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG18
UGA*UGA5
GGC*GCC3
GAAG*CAC2
UUG*UUG2
GUC*GUC2
GAU*GUC2
UGC*GGA2
AGU*AAU2
CGC*GGG2
CAG*CAG2
CAG*UAG1
GAAUC*GAC1
UCG*CCG1
UUA*UUG1
AUA*UUU1
UUU*AUA1
CUU*ACG1
UAAUAAGC*GUA1
UGG*CCA1
GAG*CUU1
GCG*CCU1
GGG*CUC1
CCG*CCG1
UGG*CGA1
CAU*ACG1
GGA*UAC1
CAU*GCG1
GGA*UUC1
GGU*AGC1
CGG*CUG1
UGG*UGG1
UGC*GUG1
UAG*CCG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G30
U*U7
G*C4
G*U4
A*A3
C*C3
A*U3
A*C3
G*A3
AA*A2
AAU*A1
U*C1
AAUAAG*U1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (39)
  • Isolated non-canonical cWW pair (12)
  • (7)
  • Decoding loop related (1)
  • cWH basepair with bulged bases (1)
  • Self complementary (1)
  • Decoding loop with one bulged A (1)
  • Other IL (1)
  • Multiple bulged bases, near cWW (1)
  • Isolated tWW contact (1)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.33 | Max 1.00
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