Motif IL_58261.1 Version IL_58261.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-8 | 4-9 | 4-10 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_037 | 4A1B | 0.2938 | 1 | 1 | LSU rRNA | G | 858 | U | 859 | G | 860 | A | 861 | A | 862 | G | 863 | * | U | 880 | G | 881 | G | 882 | A | 883 | A | 884 | C | 886 | cWW | ntSH | tHS | tHS | cWW | |||
| 2 | IL_1FJG_053 | 1FJG | 0.1957 | 0 | A | SSU rRNA | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | * | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | cWW | cwW | tSH | tHS | tHS | cWW | ||
| 3 | IL_2AW7_059 | 2AW7 | 0.1889 | 0 | A | SSU rRNA | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | * | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | cWW | cwW | tSH | ntHS | tHS | cWW | ||
| 4 | IL_4BPP_078 | 4BPP | 0.0000 | 0 | A | SSU rRNA | U | 1538 | U | 1539 | G | 1540 | A | 1541 | A | 1542 | C | 1543 | * | G | 1512 | G | 1513 | G | 1514 | A | 1515 | U | 1516 | A | 1517 | cWW | cwW | tSH | ntHS | tHS | cWW | ||
| 5 | IL_3J7A_068 | 3J7A | 0.1785 | 0 | A | SSU rRNA | U | 1863 | U | 1864 | G | 1865 | A | 1866 | A | 1867 | C | 1868 | * | G | 1837 | G | 1838 | G | 1839 | A | 1840 | U | 1841 | A | 1842 | cWW | cwW | ntSH | ntHS | tHS | cWW | ||
| 6 | IL_3U5F_079 | 3U5F | 0.1834 | 0 | 6 | SSU rRNA | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | * | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | cWW | cwW | tHS | tHS | cWW | |||
| 7 | IL_4CUV_031 | 4CUV | 0.2179 | 0 | 1 | LSU rRNA | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | cWW | ncwW | tSH | ntHS | ntHS | cWW | ||
| 8 | IL_3U5H_027 | 3U5H | 0.2477 | 0 | 5 | LSU rRNA | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | cWW | cwW | tSH | ntHS | tHS | cWW | ||
| 9 | IL_4CUX_093 | 4CUX | 0.3908 | 0 | 2 | SSU rRNA | G | 1718 | A | 1719 | G | 1720 | A | 1721 | A | 1722 | U | 1723 | * | A | 1678 | G | 1679 | G | 1680 | A | 1681 | U | 1682 | C | 1683 | ntHS | tHS | cWW | |||||
| 10 | IL_1VX6_007 | 1VX6 | 0.7866 | 0 | A | LSU rRNA | G | 130 | U | 131 | U | 132 | U | 133 | G | 134 | G | 135 | * | C | 142 | C | 143 | U | 144 | U | 145 | U | 146 | C | 147 | ncWW | ncwW | ncWw | ncWW | cWW | |||
| 11 | IL_1VWW_007 | 1VWW | 0.9169 | -5 | 5 | LSU rRNA | C | 141 | G | 142 | G | 144 | G | 145 | G | 146 | A | 147 | * | U | 122 | C | 123 | C | 124 | C | 125 | C | 126 | G | 127 | cWW | |||||||
| 12 | IL_4CUV_132 | 4CUV | 0.9160 | 0 | 1 | LSU rRNA | C | 3161 | C | 3162 | A | 3163 | C | 3164 | A | 3165 | C | 3166 | * | G | 3284 | C | 3285 | G | 3286 | U | 3287 | G | 3288 | G | 3289 | cWW | ncWW | cWW | cWW | ||||
| 13 | IL_3U5H_127 | 3U5H | 0.8864 | 0 | 5 | LSU rRNA | G | 3284 | C | 3285 | G | 3286 | U | 3287 | G | 3288 | G | 3289 | * | C | 3161 | C | 3162 | A | 3163 | C | 3164 | A | 3165 | C | 3166 | ncWW | cWWa | cWW | cWW | ncWW | |||
| 14 | IL_1VWW_141 | 1VWW | 0.9331 | 0 | 5 | LSU rRNA | G | 4721 | G | 4722 | A | 4723 | A | 4724 | C | 4725 | G | 4726 | * | U | 4577 | G | 4578 | U | 4579 | U | 4580 | G | 4581 | C | 4582 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAAG*CGGAUU | 2 |
| UUGAAC*GGGAUA | 2 |
| CUGAUG*CGGAUG | 2 |
| GUGAAG*UGGAAGC | 1 |
| UUCAAC*GGGAUA | 1 |
| AGGAUC*GAGAAU | 1 |
| GUUUGG*CCUUUC | 1 |
| GGA*UCCC | 1 |
| CCACAC*GCGUGG | 1 |
| GCGUGG*CCACAC | 1 |
| GGAACG*UGUUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAA*GGAU | 4 |
| UGAU*GGAU | 2 |
| UGAA*GGAAG | 1 |
| UCAA*GGAU | 1 |
| GGAU*AGAA | 1 |
| UUUG*CUUU | 1 |
| G*CC | 1 |
| CACA*CGUG | 1 |
| CGUG*CACA | 1 |
| GAAC*GUUG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_58261.1 | Only in the parent motif |
|---|---|---|---|
| IL_21761.1 Compare | IL_4CUX_093, IL_4CUV_031, IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4BPP_078, IL_3U5H_027, IL_1FJG_053, IL_4CUV_132 | IL_1VX6_007, IL_3U5H_127, IL_1VWW_007, IL_3J7A_068, IL_1VWW_141 | IL_4A1B_017, IL_4CUX_035 |
| IL_47444.3 Compare | IL_3U5H_127 | IL_4CUX_093, IL_4CUV_031, IL_2AW7_059, IL_4CUV_132, IL_3U5F_079, IL_4A1B_037, IL_1VWW_141, IL_3U5H_027, IL_1FJG_053, IL_1VX6_007, IL_4BPP_078, IL_1VWW_007, IL_3J7A_068 | IL_2PXV_002, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_4FAW_007, IL_2XXA_015, IL_1MFQ_007, IL_1D4R_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_58261.1 | Only in the child motif |
|---|---|---|---|
| IL_58261.2 Compare | IL_4CUX_093, IL_4CUV_031, IL_2AW7_059, IL_3U5F_079, IL_4BPP_078, IL_3U5H_027, IL_1FJG_053, IL_1VX6_007, IL_3U5H_127, IL_4CUV_132, IL_3J7A_068 | IL_1VWW_007, IL_4A1B_037, IL_1VWW_141 | IL_4W21_047, IL_4W23_051 |
| IL_78744.2 Compare | IL_4A1B_037 | IL_1VX6_007, IL_4CUV_031, IL_2AW7_059, IL_4CUV_132, IL_3U5F_079, IL_1VWW_141, IL_3U5H_027, IL_1FJG_053, IL_4CUX_093, IL_3U5H_127, IL_1VWW_007, IL_3J7A_068, IL_4BPP_078 | IL_3FTF_001, IL_1DUH_003 |
- Annotations
-
- (14)
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.12 | Avg 0.55 | Max 0.99
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