#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-104-84-94-105-86-7
1 IL_4A1B_0374A1B0.293811 LSU rRNAG858U859G860A861A862G863*U880G881G882A883A884C886cWWntSHtHStHScWW
2 IL_1FJG_0531FJG0.19570A SSU rRNAA1329U1330G1331A1332A1333G1334*C1303G1304G1305A1306U1307U1308cWWcwWtSHtHStHScWW
3 IL_2AW7_0592AW70.18890A SSU rRNAA1329U1330G1331A1332A1333G1334*C1303G1304G1305A1306U1307U1308cWWcwWtSHntHStHScWW
4 IL_4BPP_0784BPP0.00000A SSU rRNAU1538U1539G1540A1541A1542C1543*G1512G1513G1514A1515U1516A1517cWWcwWtSHntHStHScWW
5 IL_3J7A_0683J7A0.17850A SSU rRNAU1863U1864G1865A1866A1867C1868*G1837G1838G1839A1840U1841A1842cWWcwWntSHntHStHScWW
6 IL_3U5F_0793U5F0.183406 SSU rRNAU1566U1567C1568A1569A1570C1571*G1540G1541G1542A1543U1544A1545cWWcwWtHStHScWW
7 IL_4CUV_0314CUV0.217901 LSU rRNAC758U759G760A761U762G763*C768G769G770A771U772G773cWWncwWtSHntHSntHScWW
8 IL_3U5H_0273U5H0.247705 LSU rRNAC758U759G760A761U762G763*C768G769G770A771U772G773cWWcwWtSHntHStHScWW
9 IL_4CUX_0934CUX0.390802 SSU rRNAG1718A1719G1720A1721A1722U1723*A1678G1679G1680A1681U1682C1683ntHStHScWW
10 IL_1VX6_0071VX60.78660A LSU rRNAG130U131U132U133G134G135*C142C143U144U145U146C147ncWWncwWncWwncWWcWW
11 IL_1VWW_0071VWW0.9169-55 LSU rRNAC141G142G144G145G146A147*U122C123C124C125C126G127cWW
12 IL_4CUV_1324CUV0.916001 LSU rRNAC3161C3162A3163C3164A3165C3166*G3284C3285G3286U3287G3288G3289cWWncWWcWWcWW
13 IL_3U5H_1273U5H0.886405 LSU rRNAG3284C3285G3286U3287G3288G3289*C3161C3162A3163C3164A3165C3166ncWWcWWacWWcWWncWW
14 IL_1VWW_1411VWW0.933105 LSU rRNAG4721G4722A4723A4724C4725G4726*U4577G4578U4579U4580G4581C4582cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUGAAG*CGGAUU2
UUGAAC*GGGAUA2
CUGAUG*CGGAUG2
GUGAAG*UGGAAGC1
UUCAAC*GGGAUA1
AGGAUC*GAGAAU1
GUUUGG*CCUUUC1
GGA*UCCC1
CCACAC*GCGUGG1
GCGUGG*CCACAC1
GGAACG*UGUUGC1
Non-Watson-Crick part of the motif
SequenceCounts
UGAA*GGAU4
UGAU*GGAU2
UGAA*GGAAG1
UCAA*GGAU1
GGAU*AGAA1
UUUG*CUUU1
G*CC1
CACA*CGUG1
CGUG*CACA1
GAAC*GUUG1
Annotations
  • (14)
  • Basepair signature
    cWW-cWW-tSH-tHS-tHS-cWW
    Heat map statistics
    Min 0.12 | Avg 0.55 | Max 0.99
    Help

    Coloring options:

    IL_4A1B_037:IL_4A1B_037 = 0IL_4A1B_037:IL_1FJG_053 = 0.2261IL_4A1B_037:IL_2AW7_059 = 0.2674IL_4A1B_037:IL_4BPP_078 = 0.2938IL_4A1B_037:IL_3J7A_068 = 0.3163IL_4A1B_037:IL_3U5F_079 = 0.3359IL_4A1B_037:IL_4CUV_031 = 0.3281IL_4A1B_037:IL_3U5H_027 = 0.3726IL_4A1B_037:IL_4CUX_093 = 0.4882IL_4A1B_037:IL_1VX6_007 = 0.8441IL_4A1B_037:IL_1VWW_007 = 0.9809IL_4A1B_037:IL_4CUV_132 = 0.9856IL_4A1B_037:IL_3U5H_127 = 0.959IL_4A1B_037:IL_1VWW_141 = 0.96IL_1FJG_053:IL_4A1B_037 = 0.2261IL_1FJG_053:IL_1FJG_053 = 0IL_1FJG_053:IL_2AW7_059 = 0.136IL_1FJG_053:IL_4BPP_078 = 0.1957IL_1FJG_053:IL_3J7A_068 = 0.214IL_1FJG_053:IL_3U5F_079 = 0.2194IL_1FJG_053:IL_4CUV_031 = 0.24IL_1FJG_053:IL_3U5H_027 = 0.2676IL_1FJG_053:IL_4CUX_093 = 0.4299IL_1FJG_053:IL_1VX6_007 = 0.8021IL_1FJG_053:IL_1VWW_007 = 0.9221IL_1FJG_053:IL_4CUV_132 = 0.9266IL_1FJG_053:IL_3U5H_127 = 0.8941IL_1FJG_053:IL_1VWW_141 = 0.923IL_2AW7_059:IL_4A1B_037 = 0.2674IL_2AW7_059:IL_1FJG_053 = 0.136IL_2AW7_059:IL_2AW7_059 = 0IL_2AW7_059:IL_4BPP_078 = 0.1889IL_2AW7_059:IL_3J7A_068 = 0.1915IL_2AW7_059:IL_3U5F_079 = 0.2115IL_2AW7_059:IL_4CUV_031 = 0.2541IL_2AW7_059:IL_3U5H_027 = 0.284IL_2AW7_059:IL_4CUX_093 = 0.4084IL_2AW7_059:IL_1VX6_007 = 0.7857IL_2AW7_059:IL_1VWW_007 = 0.9197IL_2AW7_059:IL_4CUV_132 = 0.9215IL_2AW7_059:IL_3U5H_127 = 0.882IL_2AW7_059:IL_1VWW_141 = 0.9254IL_4BPP_078:IL_4A1B_037 = 0.2938IL_4BPP_078:IL_1FJG_053 = 0.1957IL_4BPP_078:IL_2AW7_059 = 0.1889IL_4BPP_078:IL_4BPP_078 = 0IL_4BPP_078:IL_3J7A_068 = 0.1785IL_4BPP_078:IL_3U5F_079 = 0.1834IL_4BPP_078:IL_4CUV_031 = 0.2179IL_4BPP_078:IL_3U5H_027 = 0.2477IL_4BPP_078:IL_4CUX_093 = 0.3908IL_4BPP_078:IL_1VX6_007 = 0.7866IL_4BPP_078:IL_1VWW_007 = 0.9169IL_4BPP_078:IL_4CUV_132 = 0.916IL_4BPP_078:IL_3U5H_127 = 0.8864IL_4BPP_078:IL_1VWW_141 = 0.9331IL_3J7A_068:IL_4A1B_037 = 0.3163IL_3J7A_068:IL_1FJG_053 = 0.214IL_3J7A_068:IL_2AW7_059 = 0.1915IL_3J7A_068:IL_4BPP_078 = 0.1785IL_3J7A_068:IL_3J7A_068 = 0IL_3J7A_068:IL_3U5F_079 = 0.1163IL_3J7A_068:IL_4CUV_031 = 0.2246IL_3J7A_068:IL_3U5H_027 = 0.2787IL_3J7A_068:IL_4CUX_093 = 0.4068IL_3J7A_068:IL_1VX6_007 = 0.8127IL_3J7A_068:IL_1VWW_007 = 0.9359IL_3J7A_068:IL_4CUV_132 = 0.9459IL_3J7A_068:IL_3U5H_127 = 0.9212IL_3J7A_068:IL_1VWW_141 = 0.9713IL_3U5F_079:IL_4A1B_037 = 0.3359IL_3U5F_079:IL_1FJG_053 = 0.2194IL_3U5F_079:IL_2AW7_059 = 0.2115IL_3U5F_079:IL_4BPP_078 = 0.1834IL_3U5F_079:IL_3J7A_068 = 0.1163IL_3U5F_079:IL_3U5F_079 = 0IL_3U5F_079:IL_4CUV_031 = 0.2297IL_3U5F_079:IL_3U5H_027 = 0.2728IL_3U5F_079:IL_4CUX_093 = 0.4128IL_3U5F_079:IL_1VX6_007 = 0.7867IL_3U5F_079:IL_1VWW_007 = 0.9074IL_3U5F_079:IL_4CUV_132 = 0.9217IL_3U5F_079:IL_3U5H_127 = 0.9029IL_3U5F_079:IL_1VWW_141 = 0.9537IL_4CUV_031:IL_4A1B_037 = 0.3281IL_4CUV_031:IL_1FJG_053 = 0.24IL_4CUV_031:IL_2AW7_059 = 0.2541IL_4CUV_031:IL_4BPP_078 = 0.2179IL_4CUV_031:IL_3J7A_068 = 0.2246IL_4CUV_031:IL_3U5F_079 = 0.2297IL_4CUV_031:IL_4CUV_031 = 0IL_4CUV_031:IL_3U5H_027 = 0.1351IL_4CUV_031:IL_4CUX_093 = 0.3911IL_4CUV_031:IL_1VX6_007 = 0.7707IL_4CUV_031:IL_1VWW_007 = 0.8745IL_4CUV_031:IL_4CUV_132 = 0.9095IL_4CUV_031:IL_3U5H_127 = 0.8598IL_4CUV_031:IL_1VWW_141 = 0.9066IL_3U5H_027:IL_4A1B_037 = 0.3726IL_3U5H_027:IL_1FJG_053 = 0.2676IL_3U5H_027:IL_2AW7_059 = 0.284IL_3U5H_027:IL_4BPP_078 = 0.2477IL_3U5H_027:IL_3J7A_068 = 0.2787IL_3U5H_027:IL_3U5F_079 = 0.2728IL_3U5H_027:IL_4CUV_031 = 0.1351IL_3U5H_027:IL_3U5H_027 = 0IL_3U5H_027:IL_4CUX_093 = 0.4174IL_3U5H_027:IL_1VX6_007 = 0.723IL_3U5H_027:IL_1VWW_007 = 0.8318IL_3U5H_027:IL_4CUV_132 = 0.8746IL_3U5H_027:IL_3U5H_127 = 0.8215IL_3U5H_027:IL_1VWW_141 = 0.8595IL_4CUX_093:IL_4A1B_037 = 0.4882IL_4CUX_093:IL_1FJG_053 = 0.4299IL_4CUX_093:IL_2AW7_059 = 0.4084IL_4CUX_093:IL_4BPP_078 = 0.3908IL_4CUX_093:IL_3J7A_068 = 0.4068IL_4CUX_093:IL_3U5F_079 = 0.4128IL_4CUX_093:IL_4CUV_031 = 0.3911IL_4CUX_093:IL_3U5H_027 = 0.4174IL_4CUX_093:IL_4CUX_093 = 0IL_4CUX_093:IL_1VX6_007 = 0.7823IL_4CUX_093:IL_1VWW_007 = 0.9103IL_4CUX_093:IL_4CUV_132 = 0.8893IL_4CUX_093:IL_3U5H_127 = 0.8758IL_4CUX_093:IL_1VWW_141 = 0.9468IL_1VX6_007:IL_4A1B_037 = 0.8441IL_1VX6_007:IL_1FJG_053 = 0.8021IL_1VX6_007:IL_2AW7_059 = 0.7857IL_1VX6_007:IL_4BPP_078 = 0.7866IL_1VX6_007:IL_3J7A_068 = 0.8127IL_1VX6_007:IL_3U5F_079 = 0.7867IL_1VX6_007:IL_4CUV_031 = 0.7707IL_1VX6_007:IL_3U5H_027 = 0.723IL_1VX6_007:IL_4CUX_093 = 0.7823IL_1VX6_007:IL_1VX6_007 = 0IL_1VX6_007:IL_1VWW_007 = 0.4066IL_1VX6_007:IL_4CUV_132 = 0.4425IL_1VX6_007:IL_3U5H_127 = 0.4437IL_1VX6_007:IL_1VWW_141 = 0.5419IL_1VWW_007:IL_4A1B_037 = 0.9809IL_1VWW_007:IL_1FJG_053 = 0.9221IL_1VWW_007:IL_2AW7_059 = 0.9197IL_1VWW_007:IL_4BPP_078 = 0.9169IL_1VWW_007:IL_3J7A_068 = 0.9359IL_1VWW_007:IL_3U5F_079 = 0.9074IL_1VWW_007:IL_4CUV_031 = 0.8745IL_1VWW_007:IL_3U5H_027 = 0.8318IL_1VWW_007:IL_4CUX_093 = 0.9103IL_1VWW_007:IL_1VX6_007 = 0.4066IL_1VWW_007:IL_1VWW_007 = 0IL_1VWW_007:IL_4CUV_132 = 0.3599IL_1VWW_007:IL_3U5H_127 = 0.3769IL_1VWW_007:IL_1VWW_141 = 0.4514IL_4CUV_132:IL_4A1B_037 = 0.9856IL_4CUV_132:IL_1FJG_053 = 0.9266IL_4CUV_132:IL_2AW7_059 = 0.9215IL_4CUV_132:IL_4BPP_078 = 0.916IL_4CUV_132:IL_3J7A_068 = 0.9459IL_4CUV_132:IL_3U5F_079 = 0.9217IL_4CUV_132:IL_4CUV_031 = 0.9095IL_4CUV_132:IL_3U5H_027 = 0.8746IL_4CUV_132:IL_4CUX_093 = 0.8893IL_4CUV_132:IL_1VX6_007 = 0.4425IL_4CUV_132:IL_1VWW_007 = 0.3599IL_4CUV_132:IL_4CUV_132 = 0IL_4CUV_132:IL_3U5H_127 = 0.3039IL_4CUV_132:IL_1VWW_141 = 0.5159IL_3U5H_127:IL_4A1B_037 = 0.959IL_3U5H_127:IL_1FJG_053 = 0.8941IL_3U5H_127:IL_2AW7_059 = 0.882IL_3U5H_127:IL_4BPP_078 = 0.8864IL_3U5H_127:IL_3J7A_068 = 0.9212IL_3U5H_127:IL_3U5F_079 = 0.9029IL_3U5H_127:IL_4CUV_031 = 0.8598IL_3U5H_127:IL_3U5H_027 = 0.8215IL_3U5H_127:IL_4CUX_093 = 0.8758IL_3U5H_127:IL_1VX6_007 = 0.4437IL_3U5H_127:IL_1VWW_007 = 0.3769IL_3U5H_127:IL_4CUV_132 = 0.3039IL_3U5H_127:IL_3U5H_127 = 0IL_3U5H_127:IL_1VWW_141 = 0.4761IL_1VWW_141:IL_4A1B_037 = 0.96IL_1VWW_141:IL_1FJG_053 = 0.923IL_1VWW_141:IL_2AW7_059 = 0.9254IL_1VWW_141:IL_4BPP_078 = 0.9331IL_1VWW_141:IL_3J7A_068 = 0.9713IL_1VWW_141:IL_3U5F_079 = 0.9537IL_1VWW_141:IL_4CUV_031 = 0.9066IL_1VWW_141:IL_3U5H_027 = 0.8595IL_1VWW_141:IL_4CUX_093 = 0.9468IL_1VWW_141:IL_1VX6_007 = 0.5419IL_1VWW_141:IL_1VWW_007 = 0.4514IL_1VWW_141:IL_4CUV_132 = 0.5159IL_1VWW_141:IL_3U5H_127 = 0.4761IL_1VWW_141:IL_1VWW_141 = 0IL_4A1B_037IL_1FJG_053IL_2AW7_059IL_4BPP_078IL_3J7A_068IL_3U5F_079IL_4CUV_031IL_3U5H_027IL_4CUX_093IL_1VX6_007IL_1VWW_007IL_4CUV_132IL_3U5H_127IL_1VWW_141Discrepancy0.000.200.400.600.80
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