#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 71-31-72-42-63-74-75-6
1 IL_6JDV_0046JDV0.19641C-loopBsgRNAG105C106U107C108U109*A138C140ncSHcWWtWHcWScWW
2 IL_4V88_4434V880.16412C-loopA6 SSU rRNAU1617C1618C1619C1620U1621*A1157A1160ncSHcWWncSHtWHcWScWW
3 IL_8HNT_0028HNT0.12031C-loopBsgRNAG87C88U89C90U91*A120C122ncSHcWWncSHtWHcWScWW
4 IL_5J7L_2725J7L0.13102C-loopDA LSU rRNAG864C865A866C867U868*A909C912cWWcSHtWHcWScWW
5 IL_4V9F_0514V9F0.15301C-loop0 LSU rRNAG1425C1426A1427C1428U1429*A1437C1439cWWcSHtWHcWScWW
6 IL_4V9F_0934V9F0.14261C-loop0 LSU rRNAC2717C2718A2719C2720U2721*A2761G2763cWWcSHtWHcWScWW
7 IL_7A0S_0957A0S0.14821C-loopX LSU rRNAC2659C2660G2661C2662U2663*A2705G2707cWWncSHtWHcWScWW
8 IL_4WF9_1014WF90.11711C-loopX LSU rRNAC2707C2708U2709C2710U2711*A2752G2754cWWncSHtWHntHScWScWW
9 IL_5J7L_3475J7L0.10861C-loopDA LSU rRNAU2680C2681A2682C2683U2684*A2725A2727ncSHcWWcSHtWHcWScWW
10 IL_8VTW_1038VTW0.00001C-loop (H)1A LSU rRNAC2680C2681U2682C2683U2684*A2725G2727cWWcSHtWHtHScWScWW
11 IL_5B2P_0035B2P0.13011C-loopBGuide RNAC76C77U78C79U80*A88G90cWWcSHtWHtHScWScWW
12 IL_4JRC_0034JRC0.18011C-loopBDistal Stem I region of the glyQS T box leader RNAC29C30U31C32U33*A73G75cWWcSHtWHtHScWScWW
13 IL_5J7L_2915J7L0.20341C-loopDA LSU rRNAC1319C1320A1321A1322C1323*G1331G1333cWWncSHtWHcWScWW
14 IL_8VTW_0508VTW0.20171C-loop (H)1A LSU rRNAG1319C1320A1321A1322U1323*A1331C1333cWWncSHtWHcWScWW
15 IL_8C3A_4828C3A0.284611 LSU rRNAU1497C1498A1499A1500C1501*G1509A1511ncWWtWHcWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCUCU*AUC2
CCUCU*AUG2
CCUCU*ACG2
UCCCU*ACCA1
GCACU*AAAC1
GCACU*AGC1
CCACU*ACG1
CCGCU*AUG1
UCACU*AAA1
CCAAC*GGG1
GCAAU*AGC1
UCAAC*GGA1
Non-Watson-Crick part of the motif
SequenceCounts
CUC*U4
CAA*G3
CUC*C2
CCC*CC1
CAC*AA1
CAC*G1
CAC*C1
CGC*U1
CAC*A1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • C-loop (12)
  • C-loop (H) (2)
  • (1)
  • Basepair signature
    cWW-cWS-cSH-tWH-cWW-L
    Heat map statistics
    Min 0.11 | Avg 0.20 | Max 0.37
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