#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2break 3 41-42-3
1 IL_1XOK_0021XOK0.94272Major groove intercalationA+BC868C869*G877G880cWWcWW
2 IL_387D_001387D0.89572Stack outside cWWAU1C2*G15A18cWWcWW
3 IL_3U5H_0313U5H0.591015G833U834*G859C861cWWcWW
4 IL_3SNP_0043SNP0.56521Single bulged UDA13C14*G18U20cWWcWW
5 IL_2QBG_0222QBG0.58671BG697C698*G763C765cWWcWW
6 IL_3U5H_1153U5H0.166425C2881U2882*A2940G2943cWWcWW
7 IL_1S72_0861S720.168220C2547C2548*G2606G2609cWWcWW
8 IL_3UXR_0963UXR0.14172AC2512G2513*C2571G2574cWWcWW
9 IL_2ZJR_0912ZJR0.16122XC2491G2492*C2550G2553cWWcWW
10 IL_3UXR_0083UXR0.00001AG271|||IC271|||J*G271|||MC271|||OcWWcWW
11 IL_4A1B_1134A1B0.330921C2869U2870*A2928G2931cWWcWW
12 IL_3SNP_0023SNP0.41761CA13C14*G18U20cWWcWW
13 IL_3SN2_0023SN20.64501Single bulged CBG13C14*G18C20cWWcWW
14 IL_1U9S_0081U9S0.68521Stack outside cWWAG195C196*G217C219cWWcWW
15 IL_1XOK_0011XOK0.77632Major groove intercalationAC846U847*A864G867cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AC*GUU2
CU*AACG2
CG*CACG2
CC*GAUG1
UC*GGAA1
GU*GGC1
GC*GAC1
CC*GUCG1
GC*GUC1
GC*GCC1
GC*GGC1
CU*AAUG1
Non-Watson-Crick part of the motif
SequenceCounts
*AC4
*U3
*AU2
*G2
*GA1
*A1
*UC1
*C1

Release history

Release0.6
Date2012-04-02
StatusNew id, 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_73663.1Only in the parent motif
IL_61133.1
Compare
IL_1XOK_001, IL_387D_001, IL_1XOK_002, IL_1S72_086, IL_1U9S_008IL_2QBG_022, IL_3SN2_002, IL_3UXR_008, IL_3SNP_004, IL_4A1B_113, IL_2ZJR_091, IL_3U5H_115, IL_3SNP_002, IL_3U5H_031, IL_3UXR_096IL_2PN4_008, IL_1ET4_008, IL_2ZJR_011, IL_2PN4_003, IL_2ZJR_016, IL_2ZJR_015, IL_2AW7_051, IL_3O30_065, IL_3O58_066, IL_3O30_022, IL_1S72_099, IL_1ET4_010, IL_3O58_142, IL_2C50_002, IL_3O30_068, IL_3O58_068, IL_2XZM_030, IL_3D2V_004, IL_3D2V_001, IL_1S72_042, IL_1S72_040, IL_2QUX_001, IL_3O30_026, IL_1GID_002, IL_2ZJR_068, IL_2XXA_003, IL_2ZJR_065, IL_2XXA_005, IL_2IPY_002, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_3O30_071, IL_3O58_074, IL_3O58_076, IL_1GID_009, IL_1ET4_006, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_1S72_030, IL_3PYO_037, IL_1S72_014, IL_2XZM_009, IL_2ZJR_093, IL_3B31_001, IL_2XXA_010, IL_2XXA_012, IL_2AW7_017, IL_2NOK_006, IL_3PYO_088, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_2ZJR_034, IL_1DUQ_006, IL_2ZJR_031, IL_2QBG_089, IL_3O58_160, IL_3IVK_003, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_1S72_064, IL_1GID_012, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_1U9S_003, IL_1U9S_001, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_3PYO_034, IL_2C50_001, IL_3PYO_032, IL_2OIU_003, IL_2OIU_001, IL_3O58_057, IL_3PYO_095, IL_3O30_010, IL_3O58_051, IL_3O58_112, IL_2C4Z_001, IL_2XZM_068, IL_2AW7_005, IL_2PJP_001, IL_1S72_074, IL_2AW7_001, IL_2AW7_002, IL_2C4Z_002, IL_2QBG_073, IL_2QBG_023, IL_3OWZ_005, IL_2GIS_001, IL_3PYO_002, IL_3OWZ_001, IL_1S72_002, IL_3PYO_008, IL_2AW7_008, IL_2BQ5_002, IL_2ZJR_056, IL_3PYO_061, IL_2BQ5_001, IL_3O30_024, IL_3PYO_064, IL_2BU1_002, IL_2BU1_001, IL_1DUQ_002, IL_3O58_100, IL_1DUQ_004, IL_3G78_004, IL_2XZM_074, IL_1DUQ_008, IL_2AW7_019, IL_2XZM_065, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_2QBG_060, IL_3D0U_005, IL_3D0U_001, IL_2IZN_002, IL_2IZN_001, IL_3IVK_001, IL_3PYO_018, IL_2A64_002, IL_2IZM_001, IL_2IZM_002, IL_1U63_004, IL_1MFQ_005, IL_1U63_002, IL_1KXK_003, IL_1X8W_001, IL_3O58_133, IL_1FUF_002, IL_3O58_137, IL_1FJG_016, IL_1FJG_014, IL_3G78_015, IL_1S72_096, IL_3DIR_001, IL_3O58_046, IL_3DIR_005, IL_1S03_002, IL_1S03_001, IL_1S03_006, IL_1S03_005, IL_1FJG_005, IL_1S72_010, IL_3MUR_003, IL_1NBS_005, IL_1R3E_001, IL_3MUR_004, IL_1R3E_002, IL_2A64_003, IL_3PYO_019, IL_2IZ9_001, IL_2IZ9_002, IL_2ZY6_002, IL_3PYO_044, IL_3O58_087, IL_2QBG_070, IL_1ET4_004, IL_2NZ4_007, IL_3PYO_072, IL_3O58_121, IL_2XZM_056, IL_2XZM_057, IL_1FJG_007, IL_1FJG_001, IL_1FJG_002, IL_2XZM_013, IL_1S72_077, IL_3MEI_001, IL_2VPL_005, IL_1S72_027, IL_1S72_026, IL_2VPL_002, IL_1S72_022, IL_3PYO_078, IL_3P49_003, IL_1S72_067, IL_2XZM_021, IL_2AW7_048, IL_1DQH_001, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_1FJG_036, IL_2QUX_004, IL_2QUX_005, IL_2QUX_006, IL_1JZV_002, IL_1JZV_005, IL_3O58_017, IL_2QUX_002, IL_2QUX_003, IL_2IPY_005, IL_2XZM_023, IL_2QBG_035, IL_1FUF_003, IL_2PLY_001, IL_2XZM_024, IL_2XZM_029, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_3DHS_002, IL_3DHS_003, IL_2ZJR_076
IL_49994.1
Compare
IL_2ZJR_091, IL_2QBG_022IL_387D_001, IL_1U9S_008, IL_3SN2_002, IL_3SNP_004, IL_3UXR_008, IL_1XOK_001, IL_4A1B_113, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3UXR_096IL_2IPY_003, IL_2IPY_006, IL_2QBG_097, IL_3O58_043, IL_3PYO_068, IL_2QBG_076, IL_3PYO_086, IL_1MJI_001, IL_1MJI_003, IL_397D_001, IL_2ZJR_072, IL_3O58_108, IL_1S72_070

Children motifs

Child motifCommon motif instancesOnly in IL_73663.1Only in the child motif
IL_06429.1
Compare
IL_387D_001, IL_2QBG_022, IL_1U9S_008, IL_3SN2_002, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031IL_3SNP_004, IL_3UXR_008, IL_3UXR_096IL_3V2F_008, IL_3V2F_095, IL_2QBG_097, IL_3G78_015
Annotations
  • (9)
  • Stack outside cWW (2)
  • Major groove intercalation (2)
  • Single bulged C (1)
  • Single bulged U (1)
  • Basepair signature
    04_cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.51 | Max 0.94
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