IL_80007.6

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2	break		3		4	1-4	2-3
1	IL_4IOA_067	4IOA	0.3622	2	Multiple bulged bases	X	U	1881	A	1884	*	U	1833	G	1834	cWW	cWW
2	IL_6JQ6_004	6JQ6	0.3266	1	Stack outside cWW	U	U	62	C	64	*	G	31	G	32	cWW	cWW
3	IL_6JQ6_001	6JQ6	0.3266	1	Stack outside cWW	U	U	62\|\|\|\|11_555	C	64\|\|\|\|11_555	*	G	31\|\|\|\|11_555	G	32\|\|\|\|11_555	cWW	cWW
4	IL_5J7L_352	5J7L	0.4701	1	Major groove intercalation	DA	U	2878	C	2880	*	G	2838	G	2839	cWW	cWW
5	IL_4IOA_084	4IOA	0.4532	1	Major groove platform	X	U	2380	C	2382	*	G	2393	G	2394	cWW	cWW
6	IL_6JQ5_001	6JQ5	0.4617	1	Stack outside cWW	A	U	62	C	64	*	G	31	G	32	cWW	cWW
7	IL_5TBW_060	5TBW	0.4000	1	Single bulged A	1	U	1398	G	1400	*	C	1411	G	1412	cWW	cWW
8	IL_4Y4O_210	4Y4O	0.3221	1	Single bulged A	2A	U	895	C	897	*	G	880	G	881	cWW	cWW
9	IL_6CF2_002	6CF2	0.3089	2	Major groove intercalation	G	C	22	G	25	*	C	10	G	11	cWW	cWW
10	IL_5J7L_302	5J7L	0.5130	1	Single bulged A	DA	C	1489	G	1491	*	C	1499	G	1500	cWW	cWW
11	IL_4V9F_101	4V9F	0.5762	1	Major groove intercalation	9	C	64	G	66	*	C	15	G	16	cWW	cWW
12	IL_5FDV_111	5FDV	0.5835	1	Single bulged A	1B	C	65	G	67	*	C	17	G	18	cWW	cWW
13	IL_4V9F_098	4V9F	0.3847	1	Single bulged A	0	C	2895	C	2897	*	G	2860	G	2861	cWW	cWW
14	IL_5TBW_045	5TBW	0.4033	1	Single bulged A	1	U	1074	C	1076	*	G	1083	A	1084	cWW	cWW
15	IL_4V88_441	4V88	0.4068	1	Single bulged A	A6	U	1630	C	1632	*	G	1146	A	1147	cWW	cWW
16	IL_4LFB_035	4LFB	0.4135	1	Single bulged A	A	U	1393	C	1395	*	G	922	A	923	cWW	cWW
17	IL_5J7L_039	5J7L	0.3928	1	Single bulged A	AA	U	1393	C	1395	*	G	922	A	923	cWW	cWW
18	IL_6CZR_147	6CZR	0.4399	1	Single bulged A	1a	U	1376	C	1378	*	G	900	A	901	cWW	cWW
19	IL_5WWT_001	5WWT	0.3625	1	Single bulged A	C	G	37	U	39	*	A	31	C	32	cWW	cWW
20	IL_4V88_399	4V88	0.3564	1	Single bulged A	A6	A	265	U	267	*	A	288	U	289	cWW	cWW
21	IL_6DLR_004	6DLR	0.3730	2	Stack outside cWW	A	G	36	C	39	*	G	22	C	23	cWW	cWW
22	IL_4Y4O_224	4Y4O	0.4362	1	Single bulged A	2A	G	1219	C	1221	*	G	1229	C	1230	cWW	cWW
23	IL_5TBW_123	5TBW	0.3324	1	Single bulged A	1	G	3177	U	3179	*	A	3210	C	3211	cWW	cWW
24	IL_5T83_004	5T83	0.3340	2	Stack outside cWW	A	G	33	C	36	*	G	22	C	23	cWW	cWW
25	IL_4V9F_002	4V9F	0.3744	1	Single bulged A	0	G	448	C	450	*	G	33	C	34	cWW	cWW
26	IL_4V88_409	4V88	0.3859	1	Single bulged A	A6	A	505	U	507	*	A	481	U	482	cWW	cWW
27	IL_6CZR_114	6CZR	0.5924	1	Single bulged A	1a	G	392	C	394	*	G	45	U	46	cWW	cWW
28	IL_5TBW_013	5TBW	0.4746	1	Single bulged A	1+4	G	337	C	339	*	G	25	U	26	cWW	cWW
29	IL_4LFB_002	4LFB	0.4787	1	Single bulged A	A	G	396	C	398	*	G	44	U	45	cWW	cWW
30	IL_4Y4O_242	4Y4O	0.4682	1	Single bulged A	2A	G	1980	C	1982	*	G	1770	C	1771	cWW	cWW
31	IL_1U9S_008	1U9S	0.3523	1	Stack outside cWW	A	G	217	C	219	*	G	195	C	196	cWW	cWW
32	IL_1U9S_001	1U9S	0.4005	1	Single bulged A	A	G	107	C	109	*	G	95	C	96	cWW	cWW
33	IL_1CSL_002	1CSL	0.4003	1	Single bulged A	B+A	G	67	C	69	*	G	50	C	51	cWW	cWW
34	IL_1DUQ_002	1DUQ	0.3751	1	Single bulged A	B+A	G	120	C	122	*	G	108	C	109	cWW	cWW
35	IL_4IOA_011	4IOA	0.4358	1	Single bulged A	X	G	600	C	602	*	G	678	C	679	cWW	cWW
36	IL_4WF9_068	4WF9	0.5033	1	Single bulged A	X	G	2007	U	2009	*	G	1797	C	1798	cWW	cWW
37	IL_5J7L_312	5J7L	0.5159	1	Single bulged A	DA	G	1980	U	1982	*	G	1770	C	1771	cWW	cWW
38	IL_4IOA_064	4IOA	0.5477	1	Single bulged A	X	G	1963	U	1965	*	G	1761	C	1762	cWW	cWW
39	IL_5J7L_261	5J7L	0.5817	1	Single bulged A	DA	G	697	C	698	*	G	763	C	765	cWW	cWW
40	IL_5TBW_001	5TBW	0.4439	0		1+4	U	3	U	4	*	A	155	U	156	cWw	cWW
41	IL_6OZP_001	6OZP	0.4692	0		C+D	U	12	A	13	*	U	22	U	23	cWw	cWW
42	IL_6OZP_002	6OZP	0.4236	0		D+C	U	12	A	13	*	U	22	U	23	cWw	cWW
43	IL_6OZO_001	6OZO	0.4282	0		C+D	U	12\|\|A	A	13	*	U	22	U	23	cWw	cWW
44	IL_6OZO_002	6OZO	0.4393	0		D+C	U	12\|\|A	A	13	*	U	22	U	23	cWw	cWW
45	IL_6OZR_001	6OZR	0.4020	0		C+D	U	12	A	13	*	U	22	U	23	cWw	cWW
46	IL_6OZR_002	6OZR	0.3848	0		D+C	U	12	A	13	*	U	22	U	23	cWw	cWW
47	IL_4JGN_006	4JGN	0.3182	0		E	U	503	G	504	*	C	520\|\|\|\|4_555	U	521\|\|\|\|4_555	cWw	cWW
48	IL_5TBW_082	5TBW	0.3662	1	Single bulged A	1	G	2323	G	2325	*	C	2128	U	2129	cWW	cWW
49	IL_4WF9_002	4WF9	0.2654	1	Single bulged A	X	G	488	C	490	*	G	36	C	37	cWW	cWW
50	IL_5J7L_246	5J7L	0.2453	1	Single bulged A	DA	G	442	C	444	*	G	36	C	37	cWW	cWW
51	IL_4Y4O_180	4Y4O	0.3079	1	Single bulged A	2A	G	442	C	444	*	G	36	C	37	cWW	cWW
52	IL_4IOA_002	4IOA	0.3161	1	Single bulged A	X	G	454	C	456	*	G	36	C	37	cWW	cWW
53	IL_1NBS_005	1NBS	0.2862	1	Single bulged A	B	G	129	C	131	*	G	113	C	114	cWW	cWW
54	IL_4Y4O_196	4Y4O	0.3396	1	Single bulged A	2A	C	697	C	698	*	G	763	G	765	cWW	cWW
55	IL_4IOA_015	4IOA	0.3320	1	Single bulged A	X	C	710	C	711	*	G	776	G	778	cWW	cWW
56	IL_4Y4O_235	4Y4O	0.3791	1	Single bulged A	2A	C	1450\|\|\|A	C	1451	*	G	1459	G	1461	cWW	cWW
57	IL_4WF9_022	4WF9	0.4193	1	Single bulged A	X	U	742	C	743	*	G	808	A	810	cWW	cWW
58	IL_3OXE_001	3OXE	0.4216	1	Single bulged A	A	U	27	C	28	*	G	12	A	14	cWW	cWW
59	IL_3V7E_001	3V7E	0.3522	1	Single bulged A	C	C	40	C	41	*	G	13	G	15	cWW	cWW
60	IL_1SI2_001	1SI2	0.2612	0		B	C	406\|\|\|\|4_675	U	407\|\|\|\|4_675	*	C	401	G	402	cWW	ncWW
61	IL_6RA4_001	6RA4	0.2882	0		M+L	C	406	U	407	*	C	401	G	402	cWW	cWW
62	IL_1SI3_002	1SI3	0.3250	0		B	C	406\|\|\|\|4_675	U	407\|\|\|\|4_675	*	C	401	G	402	cWW	cWW
63	IL_4PHY_004	4PHY	0.2866	1	Single bulged A	A+B	C	20	C	22	*	G	30	G	31	ncWW	cWW
64	IL_4PHY_002	4PHY	0.2832	1	Single bulged A	B+A	G	38	G	40	*	C	12	C	13	cWW	cWW
65	IL_6CMN_001	6CMN	0.2691	3	Multiple bulged bases	D	A	22	G	26	*	C	39	U	40	cWW	cWW
66	IL_5FJC_001	5FJC	0.2224	1	Single bulged A	A	G	13	G	15	*	C	40	C	41	cWW	cWW
67	IL_1XOK_001	1XOK	0.2429	2	Major groove intercalation	A	A	864	G	867	*	C	846	U	847	cWW	cWW
68	IL_5LYS_007	5LYS	0.2455	2	Major groove intercalation	B	A	39	G	42	*	C	67	U	68	cWW	cWW
69	IL_4P43_002	4P43	0.1686	1	Single bulged A	B+A	A	40	G	42	*	C	7	U	8	cWW	cWW
70	IL_4P43_003	4P43	0.1730	1	Single bulged A	A+B	A	17	G	19	*	C	30	U	31	cWW	cWW
71	IL_1XOK_002	1XOK	0.2124	2	Major groove intercalation	B+A	G	877	G	880	*	C	868	C	869	cWW	cWW
72	IL_5J7L_002	5J7L	0.1631	1	Single bulged A	AA	C	396	U	398	*	A	44	G	45	cWW	cWW
73	IL_5TBW_098	5TBW	0.1601	1	Single bulged A	1	C	2625	C	2627	*	G	2614	G	2615	cWW	cWW
74	IL_387D_001	387D	0.2059	2	Stack outside cWW	A	G	15	A	18	*	U	1	C	2	cWW	cWW
75	IL_4P3U_002	4P3U	0.2706	1	Single bulged A	B+A	A	40	G	42	*	C	7	U	8	ncWW	cWW
76	IL_2VPL_002	2VPL	0.2162	1	Single bulged A	B	G	28	A	30	*	U	16	C	17	cWW	cWW
77	IL_2YGH_005	2YGH	0.2076	1	Single bulged A	A	G	13\|\|\|\|8_554	G	15\|\|\|\|8_554	*	C	40\|\|\|\|8_554	C	41\|\|\|\|8_554	cWW	cWW
78	IL_2YGH_001	2YGH	0.2076	1	Single bulged A	A	G	13	G	15	*	C	40	C	41	cWW	cWW
79	IL_1U63_004	1U63	0.2205	1	Single bulged A	D	G	28	A	30	*	U	16	C	17	cWW	cWW
80	IL_4V9F_079	4V9F	0.1697	1	Single bulged A	0	U	2290	C	2292	*	G	2279	A	2280	cWW	cWW
81	IL_1JZV_002	1JZV	0.1930	1	Single bulged A	B+A	U	12	C	14	*	G	4	A	5	cWW	cWW
82	IL_4AOB_001	4AOB	0.1872	1	Single bulged A	A	G	13	G	15	*	C	40	C	41	cWW	cWW
83	IL_4AOB_006	4AOB	0.1872	1	Single bulged A	A	G	13\|\|\|\|7_555	G	15\|\|\|\|7_555	*	C	40\|\|\|\|7_555	C	41\|\|\|\|7_555	cWW	cWW
84	IL_5LYS_006	5LYS	0.1297	2	Stack outside cWW	B	G	70	G	73	*	C	36	C	37	cWW	cWW
85	IL_6CMN_002	6CMN	0.1445	1	Single bulged A	D	G	34	G	36	*	C	29	C	30	cWW	cWW
86	IL_5AOX_002	5AOX	0.1170	1	Single bulged A	C	G	56	G	58	*	C	108	C	109	cWW	cWW
87	IL_1I9X_001	1I9X	0.1389	1	Single bulged A	A+B	U	4	A	6	*	U	9	A	10	cWW	cWW
88	IL_1I9X_002	1I9X	0.1168	1	Single bulged A	B+A	U	4	A	6	*	U	9	A	10	cWW	cWW
89	IL_5OB3_004	5OB3	0.0903	2	Multiple bulged bases	A	G	41	G	44	*	C	23	C	24	cWW	cWW
90	IL_4KZD_006	4KZD	0.0000	2	Stack outside cWW	R	G	49	G	52	*	C	30	C	31	cWW	cWW
91	IL_4P3U_011	4P3U	0.1171	1	Single bulged A	C+D	A	17	G	19	*	C	30	U	31	cWW	cWW
92	IL_4P3U_005	4P3U	0.1510	1	Single bulged A	B+A	C	30	U	31	*	A	17	G	19	cWW	cWW
93	IL_4P3U_008	4P3U	0.1558	1	Single bulged A	C+D	C	7	U	8	*	A	40	G	42	cWW	cWW
94	IL_6D3P_002	6D3P	0.2071	1	Single bulged A	A	C	12\|\|\|\|12_566	C	13\|\|\|\|12_566	*	G	27\|\|\|\|12_566	G	29\|\|\|\|12_566	cWW	cWW
95	IL_6D3P_004	6D3P	0.2071	1	Single bulged A	A	C	12	C	13	*	G	27	G	29	cWW	cWW
96	IL_2C4Q_005	2C4Q	0.1922	1	Single bulged A	R	C	14\|\|\|\|P_P	C	15\|\|\|\|P_P	*	G	5\|\|\|\|P_P	G	7\|\|\|\|P_P
97	IL_2C4Q_001	2C4Q	0.1922	1	Single bulged A	R	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
98	IL_5TBW_372	5TBW	0.1698	1	Single bulged A	AS	C	15	U	16	*	A	63	G	65	cWW	cWW
99	IL_4MCF_001	4MCF	0.1571	0		D+B	U	10	G	11	*	C	9	U	10	ncwW	cWW
100	IL_5J7L_344	5J7L	0.1567	1	Single bulged A	DA	C	2601	G	2603	*	C	2591	G	2592	cWW	cWW
101	IL_4V9F_090	4V9F	0.1321	1	Single bulged A	0	C	2636	G	2638	*	C	2626	G	2627	cWW	cWW
102	IL_5TBW_113	5TBW	0.1630	1	Single bulged A	1	C	2970	G	2972	*	C	2960	G	2961	cWW	cWW
103	IL_4V88_452	4V88	0.2264	1	Single bulged A	A6	C	1426	G	1428	*	C	1280	G	1281	cWW	cWW
104	IL_2QUX_002	2QUX	0.2438	1	Single bulged A	F	C	5	G	7	*	C	20	G	21	cWW	cWW
105	IL_4V9F_064	4V9F	0.2107	1	Single bulged A	0	C	2021	G	2023	*	C	1826	G	1827	cWW	cWW
106	IL_4R4V_004	4R4V	0.2804	1	Single bulged A	A	U	712	G	714	*	C	660	A	661	cWW	cWW
107	IL_4R4V_010	4R4V	0.2804	1	Single bulged A	A	U	712\|\|\|\|7_556	G	714\|\|\|\|7_556	*	C	660\|\|\|\|7_556	A	661\|\|\|\|7_556	cWW	cWW
108	IL_4WF9_006	4WF9	0.3002	1	Single bulged A	X	C	175	G	177	*	C	152	G	153	cWW	cWW
109	IL_3MJA_001	3MJA	0.2419	1	Single bulged A	B	C	6194	G	6195	*	C	6181	G	6183	cWW	cWW
110	IL_5TBW_024	5TBW	0.2681	1	Single bulged A	1	C	752	C	753	*	G	779	G	781	cWW	cWW
111	IL_5U30_001	5U30	0.2852	0		B	G	0	G	1	*	C	11	A	12	cWW	cWW
112	IL_6MSF_003	6MSF	0.2696	1	Single bulged A	R	G	12\|\|\|\|P_P	G	13\|\|\|\|P_P	*	C	2\|\|\|\|P_P	C	4\|\|\|\|P_P
113	IL_6MSF_001	6MSF	0.2696	1	Single bulged A	R	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	*	C	2\|\|\|\|P_1	C	4\|\|\|\|P_1	cWW	cWW
114	IL_4LGT_002	4LGT	0.2767	1	Single bulged A	E	C	2591	G	2592	*	C	2601	G	2603	cWW	cWW
115	IL_5J7L_049	5J7L	0.3149	1	Single bulged A	AA	U	1060	G	1061	*	C	1195	A	1197	cWW	cWW
116	IL_4R4V_009	4R4V	0.3251	1	Single bulged A	A	C	651\|\|\|\|7_556	G	653\|\|\|\|7_556	*	C	766\|\|\|\|7_556	G	767\|\|\|\|7_556	cWW	cWW
117	IL_4R4V_003	4R4V	0.3251	1	Single bulged A	A	C	651	G	653	*	C	766	G	767	cWW	cWW
118	IL_1MFQ_005	1MFQ	0.3997	1	Single bulged A	A	G	175	G	177	*	C	220	C	221	cWW	cWW
119	IL_5TBW_058	5TBW	0.5414	1	Single bulged A	1	C	1420	G	1421	*	C	1385	G	1387	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAG*CG	12
GAC*GC	12
CC*GAG	9
GAG*CC	9
UAC*GA	7
UA*UU	6
AAG*CU	4
UGC*GG	3
UAC*GG	3
CAC*GG	3
GAC*GU	3
GAU*GC	3
CU*CG	3
CU*AAG	3
CG*CAG	3
GAU*AC	2
AAU*AU	2
UG*CU	2
UC*GAA	2
GAA*UC	2
UAA*UA	2
GUUG*CC	2
UAG*CA	2
GG*CAC	2
UGAA*UG	1
UAG*CG	1
CUGG*CG	1
GGAC*GC	1
GGUC*GC	1
GGC*GC	1
GC*GAC	1
UU*AU	1
GAG*CU	1
AUCUG*CU	1
AAUG*CU	1
AUUG*CU	1
GAUG*CC	1
CAU*AG	1
GGAA*UC	1
GCUG*CC	1
GG*CA	1
UG*CAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	69
*A	21
*	13
G*	4
GA*	3
UU*	3
AU*	2
UG*	1
GU*	1
UCU*	1
CU*	1

Release history

Release	3.23	3.24
Date	2019-09-19	2019-10-16
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_80007.6 Version IL_80007.6 of this group appears in releases 3.23 to 3.24 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_80007.6 Version IL_80007.6 of this group appears in releases 3.23 to 3.24

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Csv

Json