IL_83039.12

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	3-4
1	IL_7A0S_079	7A0S	1.3508	Single bulged U	X	LSU rRNA	U	2197	U	2198	C	2199	*	G	2186	A	2187	cWW	cWW
2	IL_1S03_005	1S03	1.2010	Single bulged U	B	47-MER	A	6	U	7	G	8	*	C	41	U	42	cWW	cWW
3	IL_1S03_001	1S03	1.2223	Single bulged U	A	47-MER	A	6	U	7	G	8	*	C	41	U	42	cWW	cWW
4	IL_6JDV_003	6JDV	0.7739	Single bulged U	B	sgRNA	G	95	U	96	G	97	*	C	81	C	82	cWW	cWW
5	IL_6M0X_002	6M0X	0.8171	Single bulged U	B	RNA (71-MER)	A	59	U	60	G	61	*	C	55	U	56	cWW	cWW
6	IL_3TZR_002	3TZR	0.5089	Single bulged U	B+A	RNA (16-mer)	G	105	U	106	G	107	*	U	61	C	62	cWW	cWW
7	IL_5TBW_134	5TBW	0.4791	Single bulged U	1	LSU rRNA	G	3340	U	3341	A	3342	*	U	3363	C	3364	cWW	cWW
8	IL_5TBW_025	5TBW	0.6601	Single bulged U	1	LSU rRNA	A	775	U	776	U	777	*	A	755	U	756	cWW	cWW
9	IL_5TBW_086	5TBW	0.7094	Single bulged U	1	LSU rRNA	C	2204	U	2205	G	2206	*	C	2237	G	2238	cWW	cWW
10	IL_4WF9_088	4WF9	0.7897	Single bulged U	X	LSU rRNA	U	2428	U	2429	C	2430	*	G	2441	G	2442	cWW	cWW
11	IL_5J7L_334	5J7L	0.6948	Single bulged U	DA	LSU rRNA	U	2401	U	2402	C	2403	*	G	2414	G	2415	cWW	cWW
12	IL_6MWN_006	6MWN	0.5619	Single bulged U	B	IRES	U	659	U	660	C	661	*	G	646	A	647	cWW	cWW
13	IL_2R8S_004	2R8S	0.4822	Single bulged U	R	P4-P6 RNA RIBOZYME DOMAIN	G	129	U	130	U	131	*	A	192	C	193	cWW	cWW
14	IL_2ZY6_002	2ZY6	0.6465	Single bulged U	A	phenylalanyl transfer RNA	G	10	U	11	G	12	*	C	24	C	25	cWW	cWW
15	IL_4WF9_030	4WF9	0.6702	Single bulged U	X	LSU rRNA	A	969	U	970	U	971	*	A	897	U	898	cWW	cWW
16	IL_2UWM_003	2UWM	0.8138	Single bulged U	D	RNA (23-mer)	C	25	U	26	G	27	*	C	21	G	22	cWW	cWW
17	IL_4C7O_001	4C7O	1.0264	Single bulged U	E	SRP RNA	G	38	U	39	A	40	*	U	7	C	8	cWW	cWW
18	IL_4KZD_001	4KZD	1.0450	Single bulged U	R	RNA (84-MER)	C	74	U	75	G	76	*	C	10	G	11	cWW	cWW
19	IL_3W3S_002	3W3S	1.0189	Single bulged U	B	Selenocysteine transfer RNA	G	43	U	43\|\|\|A	G	44	*	C	26	C	27	cWW	cWW
20	IL_4O26_001	4O26	0.6707	Single bulged U	E	Telomerase TR	G	181	U	182	C	183	*	G	193	C	194	cWW	cWW
21	IL_2A64_003	2A64	0.6884	Single bulged U	A	ribonuclease P RNA	G	66	U	67	G	68	*	C	77	C	78	cWW	cWW
22	IL_6JQ5_003	6JQ5	0.6615	Single bulged U	A	RNA (82-MER)	A	38	U	39	C	40	*	G	55	U	56	cWW	cWW
23	IL_6JQ5_006	6JQ5	0.6750	Single bulged U	B	RNA (82-MER)	A	38	U	39	C	40	*	G	55	U	56	cWW	cWW
24	IL_6JQ6_006	6JQ6	0.6650	Single bulged U	U	RNA (81-MER)	A	38	U	39	C	40	*	G	55	U	56	cWW	cWW
25	IL_5TBW_131	5TBW	0.5534	Single bulged U	1	LSU rRNA	U	3381	U	3382	G	3383	*	C	3324	G	3325	cWW	cWW
26	IL_7KKV_001	7KKV	0.5095	Single bulged U	B	OLE* RNA	U	497	U	498	U	499	*	A	506	G	507	cWW	cWW
27	IL_5J7L_331	5J7L	0.6268	Single bulged U	DA	LSU rRNA	U	2202	U	2203	G	2204	*	U	2220	G	2221	cWW	cWW
28	IL_5TBW_053	5TBW	0.4016	Single bulged U	1	LSU rRNA	G	1207	U	1208	G	1209	*	C	1296	C	1297	cWW	cWW
29	IL_7VTI_004	7VTI	0.4376	Single bulged U	B	crRNA	G	21	U	22	G	23	*	C	14	C	15	cWW	cWW
30	IL_3MEI_001	3MEI	0.4143	Single bulged U	B+A	RNA (23-mer)	C	15	U	16	G	17	*	C	7	G	8	cWW	cWW
31	IL_4V88_449	4V88	0.5468	Single bulged U	A6	SSU rRNA	G	1268	U	1269	G	1270	*	C	1440	C	1441	cWW	cWW
32	IL_5J7L_046	5J7L	0.5499	Single bulged U	AA	SSU rRNA	G	1048	U	1049	G	1050	*	C	1208	C	1209	cWW	cWW
33	IL_4LFB_042	4LFB	0.5619	Single bulged U	A	SSU rRNA	G	1048	U	1049	G	1050	*	C	1208	C	1209	cWW	cWW
34	IL_4V9F_107	4V9F	0.5115	Single bulged U	9	5S rRNA	G	86	U	87	G	88	*	C	95	C	96	cWW	cWW
35	IL_7PMQ_002	7PMQ	0.5532	Single bulged U	F	RNA (42-MER)	A	24	U	25	A	26	*	U	40	U	41	cWW	cWW
36	IL_7PMM_002	7PMM	0.7870	Single bulged U	D	RNA (45mer) containing HP92 of the 23S rRNA	A	15	U	16	A	17	*	U	31	U	32	cWW	cWW
37	IL_2PN3_003	2PN3	0.7495	Single bulged U	B+A	RNA (20-mer)	G	105	U	106	G	107	*	U	61	C	62	cWW	cWW
38	IL_4V88_414	4V88	0.6435	Single bulged U	A6	SSU rRNA	G	557	U	558	C	559	*	G	586	C	587	cWW	cWW
39	IL_3NDB_005	3NDB	0.4408	Single bulged U	M	SRP RNA	C	139	U	140	C	141	*	G	237	G	238	cWW	cWW
40	IL_5TBW_003	5TBW	0.4442	Single bulged U	1+4	LSU rRNA + 5.8S rRNA	A	13	U	14	C	15	*	G	144	U	145	cWW	cWW
41	IL_3WBM_001	3WBM	0.3602	Single bulged U	X+Y	RNA (25-MER)	G	2	U	3	A	4	*	U	23	C	24	cWW	cWW
42	IL_7KVT_002	7KVT	0.3580	Single bulged U	B	Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions	G	50	U	51	A	52	*	U	66	C	67	cWW	cWW
43	IL_5TBW_146	5TBW	0.4475	Single bulged U	4	5.8S rRNA	A	89	U	90	C	91	*	G	68	U	69	cWW	cWW
44	IL_6LT7_001	6LT7	0.3771	Single bulged U	C	50-mer RNA	G	46	U	47	U	48	*	A	41	C	42	cWW	cWW
45	IL_6UFH_004	6UFH	0.0000	Single bulged U	A	RNA (167-MER)	U	139	U	140	C	141	*	G	154	G	155	cWW	cWW
46	IL_6UFG_004	6UFG	0.2883	Single bulged U	A	RNA (166-MER)	U	138	U	139	C	140	*	G	153	G	154	cWW	cWW
47	IL_2A64_002	2A64	0.3868	Single bulged U	A	ribonuclease P RNA	G	51	U	52	C	53	*	G	395	C	396	cWW	cWW
48	IL_2PJP_001	2PJP	0.4549	Single bulged U	B	SECIS RNA	G	16	U	17	U	18	*	A	29	C	30	cWW	cWW
49	IL_2OIU_003	2OIU	0.5544	Single bulged U	Q	L1 Ribozyme RNA Ligase	G	18	U	19	U	20	*	A	41	C	42	cWW	cWW
50	IL_6CZR_126	6CZR	0.5464	Single bulged U	1a	SSU rRNA	U	363	U	364	C	365	*	G	388	A	389	cWW	cWW
51	IL_5J7L_017	5J7L	0.5436	Single bulged U	AA	SSU rRNA	U	367	U	368	G	369	*	C	392	A	393	cWW	cWW
52	IL_4V88_407	4V88	0.6008	Single bulged U	A6	SSU rRNA	U	439	U	440	A	441	*	U	463	A	464	cWW	cWW
53	IL_4LFB_014	4LFB	0.5981	Single bulged U	A	SSU rRNA	U	367	U	368	C	369	*	G	392	A	393	cWW	cWW
54	IL_3D2V_001	3D2V	0.5298	Single bulged U	A	TPP riboswitch (THI element)	G	73	U	74	G	75	*	C	5	C	6	cWW	cWW
55	IL_4V88_439	4V88	0.3653	Single bulged U	A6	SSU rRNA	G	1051	U	1052	G	1053	*	C	1066	C	1067	cWW	cWW
56	IL_5TBW_093	5TBW	0.4438	Single bulged U	1	LSU rRNA	G	2409	U	2410	U	2411	*	A	2811	C	2812	cWW	cWW
57	IL_7RQB_080	7RQB	0.4877	Single bulged U	1A	LSU rRNA	G	2067	U	2068	G	2069	*	C	2442	C	2443	cWW	cWW
58	IL_4V9F_074	4V9F	0.5205	Single bulged U	0	LSU rRNA	A	2108	U	2109	G	2110	*	C	2477	U	2478	cWW	cWW
59	IL_7A0S_075	7A0S	0.4954	Single bulged U	X	LSU rRNA	G	2050	U	2051	G	2052	*	C	2421	C	2422	cWW	cWW
60	IL_4WF9_080	4WF9	0.5059	Single bulged U	X	LSU rRNA	G	2094	U	2095	G	2096	*	C	2469	C	2470	cWW	cWW
61	IL_4FRG_002	4FRG	0.5165	Single bulged U	B	cobalamin riboswitch aptamer domain	G	23	U	24	G	25	*	C	39	C	40	cWW	cWW
62	IL_8F5G_001	8F5G	0.4953	Single bulged U	D	RNA	A	5	U	6	C	7	*	G	21	U	22	cWW	cWW
63	IL_5TBW_130	5TBW	0.6700	Single bulged U	1	LSU rRNA	G	3318	U	3319	A	3320	*	U	3387	C	3388	ncWW	cWW
64	IL_5TBW_125	5TBW	0.8046	Single bulged U	1	LSU rRNA	G	3197	U	3198	G	3199	*	C	3193	C	3194	cWW	cWW
65	IL_5J7L_298	5J7L	0.7760	Single bulged U	DA	LSU rRNA	G	1459	U	1460	C	1461	*	G	1450	C	1451	cWW	cWW
66	IL_7RQB_008	7RQB	0.8290	Single bulged U	1A	LSU rRNA	G	271\|\|\|M	U	271\|\|\|N	C	271\|\|\|O	*	G	271\|\|\|I	C	271\|\|\|J	ncWW	cWW
67	IL_4WF9_038	4WF9	0.7265	Single bulged U	X	LSU rRNA	A	1055	U	1056	A	1057	*	U	1193	U	1194	cWW	cWW
68	IL_5J7L_279	5J7L	0.7084	Single bulged U	DA	LSU rRNA	G	1011	U	1012	C	1013	*	G	1149	C	1150	cWW	cWW
69	IL_7RQB_038	7RQB	0.7254	Single bulged U	1A	LSU rRNA	G	1011	U	1012	C	1013	*	G	1149	C	1150	cWW	cWW
70	IL_4V9F_039	4V9F	0.6921	Single bulged U	0	LSU rRNA	G	1108	U	1109	G	1110	*	C	1253	C	1254	cWW	cWW
71	IL_5TBW_050	5TBW	0.8286	Single bulged U	1	LSU rRNA	A	1180	U	1181	A	1182	*	U	1324	U	1325	cWW	cWW
72	IL_7A0S_035	7A0S	0.8993	Single bulged U	X	LSU rRNA	A	1022	U	1023	G	1024	*	C	1160	U	1161	cWW	cWW
73	IL_4V88_469	4V88	0.8202	Single bulged U	A6	SSU rRNA	U	1656	U	1657	G	1658	*	U	1743	A	1744	cWW	cWW
74	IL_6CZR_156	6CZR	0.7855	Single bulged U	1a	SSU rRNA	C	1177	U	1178	G	1179	*	C	1043	G	1044	cWW	cWW
75	IL_4LFB_046	4LFB	0.7743	Single bulged U	A	SSU rRNA	C	1195	U	1196	G	1197	*	C	1060	G	1061	cWW	cWW
76	IL_7QR8_002	7QR8	1.1596	Single bulged U	A	PTPRC sgRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
77	IL_7QQP_002	7QQP	1.1600	Single bulged U	A	AAVS1 sgRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
78	IL_5VW1_002	5VW1	1.1788	Single bulged U	C	sgRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
79	IL_4ZT0_004	4ZT0	1.1575	Single bulged U	D	single-guide RNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
80	IL_7QR0_002	7QR0	1.1660	Single bulged U	A	TRAC sgRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
81	IL_5B2T_002	5B2T	1.1650	Single bulged U	A	Guide RNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
82	IL_5FQ5_002	5FQ5	1.1592	Single bulged U	A	SGRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
83	IL_7QQX_002	7QQX	1.1620	Single bulged U	A	FANCF sgRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
84	IL_7ZO1_002	7ZO1	1.1781	Single bulged U	A	CD34 sgRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
85	IL_5F9R_003	5F9R	1.2223	Single bulged U	A	RNA (116-MER)	G	76	U	77	C	78	*	G	72	C	73	cWW	cWW
86	IL_4V88_401	4V88	1.3744	Single bulged U	A6	SSU rRNA	G	279	U	280	G	281	*	C	275	C	276	cWW	cWW
87	IL_5TBW_032	5TBW	1.0500	Single bulged U	1	LSU rRNA	C	873	U	874	G	875	*	C	886	G	887	cWW	cWW
88	IL_4V9F_029	4V9F	1.0109	Single bulged U	0	LSU rRNA	G	834	U	835	G	836	*	C	847	C	848	cWW	cWW
89	IL_4V9F_013	4V9F	0.9461	Single bulged U	0	LSU rRNA	G	307	U	308	C	309	*	G	322	C	323	cWW	cWW
90	IL_5TBW_012	5TBW	1.0170	Single bulged U	1	LSU rRNA	G	189	U	190	U	191	*	A	204	C	205	cWW	cWW
91	IL_1ET4_002	1ET4	1.1893	Major groove intercalation	A	RNA APTAMER, 35-MER	G	226	U	227	G	228	*	C	218	C	219	cWW	cWW
92	IL_3IWN_003	3IWN	1.6394	Major groove intercalation	A	C-di-GMP riboswitch	C	42	U	43	C	44	*	G	81	G	82	cWW	cWW
93	IL_3MXH_003	3MXH	1.6344	Major groove intercalation	R	c-di-GMP riboswitch	C	52	U	53	C	54	*	G	86	G	87	cWW	cWW
94	IL_5LYS_008	5LYS	1.3990	Single bulged U	B	7SK RNA	C	62	U	63	G	64	*	C	45	G	46	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUG*CC	21
GUC*GC	18
CUG*CG	8
GUU*AC	6
AUC*GU	6
AUG*CU	5
GUA*UC	5
UUC*GA	4
UUC*GG	4
AUA*UU	4
CUC*GG	3
GUG*UC	2
AUU*AU	2
UUG*CG	1
UUU*AG	1
UUG*UG	1
UUG*CA	1
UUA*UA	1
UUG*UA	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*	94

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_83039.12 Version IL_83039.12 of this group appears in releases 3.77 to 3.79 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_83039.12 Version IL_83039.12 of this group appears in releases 3.77 to 3.79

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