Motif IL_28684.1 Version IL_28684.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | 5-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J9W_083 | 3J9W | 0.2182 | 2 | BA | LSU rRNA | G | 721 | A | 722 | A | 723 | A | 724 | C | 725 | * | G | 846 | A | 847 | A | 849 | U | 850 | A | 851 | C | 853 | cWW | tHW | tHW | tWW | cWW | ntWW | |
| 2 | IL_5J7L_260 | 5J7L | 0.0681 | 2 | tHW-tHW cross-strand stack | DA | LSU rRNA | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | * | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | cWW | tHW | tHW | tWW | cWW | |
| 3 | IL_5FDU_018 | 5FDU | 0.0000 | 2 | tHW-tHW cross-strand stack (H) | 1A | LSU rRNA | G | 721 | A | 722 | A | 723 | A | 724 | C | 725 | * | G | 846 | A | 847 | A | 849 | U | 850 | A | 851 | C | 853 | cWW | tHW | tHW | tWW | cWW | |
| 4 | IL_3J7Y_010 | 3J7Y | 0.1369 | 2 | tHW-tHW cross-strand stack (H) | A | LSU rRNA | G | 1906 | A | 1907 | A | 1908 | A | 1909 | C | 1910 | * | G | 2009 | U | 2010 | A | 2012 | U | 2013 | A | 2014 | C | 2016 | cWW | tHW | tHW | ntWW | cWW | |
| 5 | IL_4V19_010 | 4V19 | 0.1459 | 2 | A | LSU rRNA | G | 241 | A | 242 | A | 243 | A | 244 | C | 245 | * | G | 345 | U | 346 | A | 348 | U | 349 | A | 350 | C | 352 | cWW | tHW | tHW | cWW | |||
| 6 | IL_4V9F_024 | 4V9F | 0.2175 | 2 | tHW-tHW cross-strand stack | 0 | LSU rRNA | G | 765 | A | 766 | A | 767 | U | 768 | C | 769 | * | G | 892 | C | 893 | A | 895 | C | 896 | A | 897 | C | 899 | cWW | tHW | tHW | cWW | ||
| 7 | IL_4V8P_337 | 4V8P | 0.2288 | 2 | tHW-tHW cross-strand stack (H) | F1 | LSU rRNA | G | 830 | A | 831 | A | 832 | A | 833 | G | 834 | * | C | 956 | U | 957 | G | 959 | U | 960 | A | 961 | C | 963 | cWW | tHW | ncHH | cWW | ||
| 8 | IL_5AJ0_061 | 5AJ0 | 0.3593 | 2 | A2 | LSU rRNA | G | 1504 | A | 1505 | A | 1506 | A | 1507 | G | 1508 | * | C | 1630 | U | 1631 | G | 1633 | U | 1634 | A | 1635 | C | 1637 | cWW | tHW | cWW | ||||
| 9 | IL_4V91_032 | 4V91 | 0.3556 | 2 | 1 | LSU rRNA | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | * | C | 931 | U | 932 | G | 934 | U | 935 | A | 936 | C | 938 | cWW | tHW | cWW | ||||
| 10 | IL_4V88_270 | 4V88 | 0.3537 | 2 | A5 | LSU rRNA | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | * | C | 931 | U | 932 | G | 934 | U | 935 | A | 936 | C | 938 | cWW | tHW | ntHH | cWW | |||
| 11 | IL_3J79_029 | 3J79 | 0.3597 | 2 | A | LSU rRNA | G | 924 | A | 925 | G | 926 | A | 927 | G | 928 | * | C | 1050 | U | 1051 | U | 1053 | U | 1054 | A | 1055 | C | 1057 | cWW | tHW | ntHH | cWW | |||
| 12 | IL_4IOA_014 | 4IOA | 0.2794 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | * | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | cWW | tHW | ntWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAC*GAGAUAGC | 4 |
| GAAAG*CUAGUAGC | 4 |
| GAAAC*GUGAUAGC | 2 |
| GAAUC*GCAACAGC | 1 |
| GAGAG*CUAUUAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*AGAUAG | 4 |
| AAA*UAGUAG | 4 |
| AAA*UGAUAG | 2 |
| AAU*CAACAG | 1 |
| AGA*UAUUAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- tHW-tHW cross-strand stack (H) (3)
- tHW-tHW cross-strand stack (3)
- Basepair signature
- cWW-R-tHW-tHW-tWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.25 | Max 0.42
Coloring options: