Motif IL_28684.1 Version IL_28684.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10		11	1-11	2-9	3-8	3-9	4-7	5-6	5-7
1	IL_3J9W_083➜	3J9W	0.2182	2		BA	LSU rRNA	G	721	A	722	A	723	A	724	C	725	*	G	846	A	847	A	849	U	850	A	851	C	853	cWW	tHW	tHW		tWW	cWW	ntWW
2	IL_5J7L_260➜	5J7L	0.0681	2	tHW-tHW cross-strand stack	DA	LSU rRNA	G	674	A	675	A	676	A	677	C	678	*	G	799	A	800	A	802	U	803	A	804	C	806	cWW	tHW	tHW		tWW	cWW
3	IL_5FDU_018➜	5FDU	0.0000	2		1A	LSU rRNA	G	721	A	722	A	723	A	724	C	725	*	G	846	A	847	A	849	U	850	A	851	C	853	cWW	tHW	tHW		tWW	cWW
4	IL_3J7Y_010➜	3J7Y	0.1369	2		A	LSU rRNA	G	1906	A	1907	A	1908	A	1909	C	1910	*	G	2009	U	2010	A	2012	U	2013	A	2014	C	2016	cWW	tHW	tHW		ntWW	cWW
5	IL_4V19_010➜	4V19	0.1459	2		A	LSU rRNA	G	241	A	242	A	243	A	244	C	245	*	G	345	U	346	A	348	U	349	A	350	C	352	cWW	tHW	tHW			cWW
6	IL_4V9F_024➜	4V9F	0.2175	2	tHW-tHW cross-strand stack	0	LSU rRNA	G	765	A	766	A	767	U	768	C	769	*	G	892	C	893	A	895	C	896	A	897	C	899	cWW	tHW	tHW		ntHH	cWW
7	IL_4V8P_337➜	4V8P	0.2288	2		F1	LSU rRNA	G	830	A	831	A	832	A	833	G	834	*	C	956	U	957	G	959	U	960	A	961	C	963	cWW	tHW	ncHH			cWW
8	IL_5AJ0_061➜	5AJ0	0.3593	2		A2	LSU rRNA	G	1504	A	1505	A	1506	A	1507	G	1508	*	C	1630	U	1631	G	1633	U	1634	A	1635	C	1637	cWW	tHW				cWW
9	IL_4V91_032➜	4V91	0.3556	2		1	LSU rRNA	G	805	A	806	A	807	A	808	G	809	*	C	931	U	932	G	934	U	935	A	936	C	938	cWW	tHW				cWW
10	IL_4V88_270➜	4V88	0.3537	2		A5	LSU rRNA	G	805	A	806	A	807	A	808	G	809	*	C	931	U	932	G	934	U	935	A	936	C	938	cWW	tHW				cWW
11	IL_3J79_029➜	3J79	0.3597	2		A	LSU rRNA	G	924	A	925	G	926	A	927	G	928	*	C	1050	U	1051	U	1053	U	1054	A	1055	C	1057	cWW	tHW	ntWW	ntWW		cWW
12	IL_4IOA_014➜	4IOA	0.2794	2	tHW-tHW cross-strand stack	X	LSU rRNA	G	687	A	688	A	689	A	690	C	691	*	G	812	A	813	A	815	U	816	A	817	C	819	cWW	tHW	ntWW		tWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAAG*CUAGUAGC	4
GAAAC*GAGAUAGC	4
GAAAC*GUGAUAGC	2
GAGAG*CUAUUAGC	1
GAAUC*GCAACAGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAA*UAGUAG	4
AAA*AGAUAG	4
AAA*UGAUAG	2
AGA*UAUUAG	1
AAU*CAACAG	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tHW-tHW cross-strand stack (3)
Basepair signature: cWW-R-tHW-tHW-tWW-cWW
Heat map statistics: Min 0.07 | Avg 0.25 | Max 0.42

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Coloring options: Nucleotide numbers

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