Motif IL_49493.4 Version IL_49493.4 of this group appears in releases 1.5 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13	1-13	2-12	3-4	3-11	4-5	5-10	6-9	7-8
1	IL_1S72_049➜	1S72	0.1967		0	LSU rRNA	A	1367	U	1368	A	1369	G	1370	U	1371	A	1372	G	1373	*	U	2052	G	2053	A	2054	A	2055	C	2056	U	2057	cWW	tSH		tHH	cSH	tWH	tHS	cWW
2	IL_4A1B_064➜	4A1B	0.2324		1	26S RRNA	G	1470	U	1471	A	1472	G	1473	U	1474	A	1475	G	1476	*	C	2349	G	2350	A	2351	A	2352	C	2353	C	2354	cWW	tSH	ncSS	tHH	cSH	tWH	tHS	cWW
3	IL_3U5H_066➜	3U5H	0.2274		5	25S rRNA	G	1444	U	1445	A	1446	G	1447	U	1448	A	1449	G	1450	*	C	2354	G	2355	A	2356	A	2357	A	2358	C	2359	cWW	tSH		tHH	cSH	tWH	tHS	cWW
4	IL_1S72_090➜	1S72	0.1975		0	LSU rRNA	A	2689	U	2690	A	2691	G	2692	U	2693	A	2694	C	2695	*	G	2700	G	2701	A	2702	A	2703	C	2704	U	2705	cWW	tSH		tHH	cSH	tWH	tHS	cWW
5	IL_1NBS_007➜	1NBS	0.2097	7x6 Sarcin-Ricin; G-bulge	B	RNase P class B	U	165	G	166	A	167	G	168	U	169	A	170	U	171	*	A	138	A	139	A	140	A	141	A	142	A	143	cWW	tSH		tHH	cSH	ntWH	tHS	cWW
6	IL_1S72_103➜	1S72	0.1907		9	5S rRNA	G	75	G	76	A	77	G	78	U	79	A	80	C	81	*	G	101	G	102	A	103	A	104	A	105	C	106	cWW	tSH		tHH	cSH	tWH	tHS	cWW
7	IL_2QBG_012➜	2QBG	0.0000		B	23S rRNA	C	239	C	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	C	257	G	258	cWW	tSH		tHH	cSH	tWH	tHS	cWW
8	IL_1S72_007➜	1S72	0.1478		0	LSU rRNA	U	210	U	211	A	212	G	213	U	214	A	215	A	216	*	U	224	G	225	A	226	A	227	C	228	G	229	cWW	tSH		tHH	cSH	tWH	tHS	cWW
9	IL_3V2F_007➜	3V2F	0.1670		A	23S Ribosomal RNA	U	239	G	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	A	257	G	258	cWW	tSH		tHH	cSH	tWH	tHS	cWW
10	IL_3DVZ_001➜	3DVZ	0.2739		A	Sarcin/Ricin Domain from E. Coli 23 S rRNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668	cWW	ntSH			cSH	tWH	tHS	cWW
11	IL_1S72_020➜	1S72	0.2679		0	LSU rRNA	C	585	C	586	A	587	G	588	U	589	A	590	A	591	*	U	567	G	568	A	569	C	570	C	571	G	572	cWW			ntHH	cSH	tWH	tHS	cWW
12	IL_4IOA_096➜	4IOA	0.3122	Sarcin-Ricin target in LSU H95; G-bulge	X	LSU rRNA	C	2631	U	2632	A	2633	G	2634	U	2635	A	2636	C	2637	*	G	2642	G	2643	A	2644	C	2645	C	2646	G	2647	cWW	ncSW		ntHH	cSH	tWH	tHS	cWW
13	IL_3V2F_099➜	3V2F	0.3354		A	23S Ribosomal RNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668	cWW	ncSW	ncSS		cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAGUAC*GGACCG	3
UUAGUAA*UGAACG	1
UGAGUAG*CGAAAG	1
CCAGUAG*CGAACG	1
CCAGUAA*UGACCG	1
GGAGUAC*GGAAAC	1
GUAGUAG*CGAACC	1
GUAGUAG*CGAAAC	1
AUAGUAC*GGAACU	1
UGAGUAU*AAAAAA	1
AUAGUAG*UGAACU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGUA*GAAC	4
UAGUA*GACC	3
GAGUA*GAAA	2
CAGUA*GACC	1
UAGUA*GAAA	1
CAGUA*GAAC	1
GAGUA*AAAA	1

Release history

Release	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13
Date	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_49493.4	Only in the parent motif
IL_49493.3 Compare	IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_3V2F_007, IL_3V2F_099, IL_1S72_007, IL_1S72_020, IL_1S72_049, IL_1S72_090, IL_4A1B_064, IL_2QBG_012, IL_4IOA_096, IL_1NBS_007		IL_2XZM_054

Children motifs

Child motif	Common motif instances	Only in IL_49493.4	Only in the child motif
IL_49493.5 Compare	IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_1S72_007, IL_1S72_020, IL_1S72_049, IL_1S72_090, IL_4A1B_064, IL_2QBG_012, IL_4IOA_096, IL_1NBS_007	IL_3V2F_099, IL_3V2F_007	IL_1VW3_084, IL_4NVV_099, IL_4NVV_007, IL_1VW3_013

Annotations: Sarcin-Ricin target in LSU H95; G-bulge (1)
7x6 Sarcin-Ricin; G-bulge (1)
Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.09 | Avg 0.24 | Max 0.43

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Coloring options: Nucleotide numbers

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