Motif IL_49493.5 Version IL_49493.5 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-5 | 5-10 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VW3_084 | 1VW3 | 0.2992 | 0 | A | 21S ribosomal RNA | U | 2919 | U | 2920 | A | 2921 | G | 2922 | U | 2923 | A | 2924 | C | 2925 | * | G | 2930 | G | 2931 | A | 2932 | C | 2933 | C | 2934 | A | 2935 | cWW | cSH | tWH | tHS | cWW | |||
| 2 | IL_4NVV_099 | 4NVV | 0.3239 | 0 | A | 23S Ribosomal RNA | C | 2664 | U | 2665 | A | 2666 | G | 2667 | U | 2668 | A | 2669 | C | 2670 | * | G | 2675 | G | 2676 | A | 2677 | C | 2678 | C | 2679 | G | 2680 | cWW | cSH | tWH | tHS | cWW | |||
| 3 | IL_4IOA_096 | 4IOA | 0.3062 | 0 | Sarcin-Ricin target in LSU H95; G-bulge | X | LSU rRNA | C | 2631 | U | 2632 | A | 2633 | G | 2634 | U | 2635 | A | 2636 | C | 2637 | * | G | 2642 | G | 2643 | A | 2644 | C | 2645 | C | 2646 | G | 2647 | cWW | cSH | tWH | tHS | cWW | ||
| 4 | IL_1S72_020 | 1S72 | 0.2573 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | C | 585 | C | 586 | A | 587 | G | 588 | U | 589 | A | 590 | A | 591 | * | U | 567 | G | 568 | A | 569 | C | 570 | C | 571 | G | 572 | cWW | ncWB | cSH | tWH | tHS | cWW | |
| 5 | IL_3DVZ_001 | 3DVZ | 0.2645 | 0 | A | Sarcin/Ricin Domain from E. Coli 23 S rRNA | C | 2652 | U | 2653 | A | 2654 | G | 2655 | U | 2656 | A | 2657 | C | 2658 | * | G | 2663 | G | 2664 | A | 2665 | C | 2666 | C | 2667 | G | 2668 | cWW | cSH | tWH | tHS | cWW | |||
| 6 | IL_4NVV_007 | 4NVV | 0.1570 | 0 | A | 23S Ribosomal RNA | U | 228 | G | 229 | A | 230 | G | 231 | U | 232 | A | 233 | G | 234 | * | C | 242 | G | 243 | A | 244 | A | 245 | A | 246 | G | 247 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 7 | IL_1S72_007 | 1S72 | 0.1787 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | U | 210 | U | 211 | A | 212 | G | 213 | U | 214 | A | 215 | A | 216 | * | U | 224 | G | 225 | A | 226 | A | 227 | C | 228 | G | 229 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 8 | IL_2QBG_012 | 2QBG | 0.1390 | 0 | B | 23S rRNA | C | 239 | C | 240 | A | 241 | G | 242 | U | 243 | A | 244 | G | 245 | * | C | 253 | G | 254 | A | 255 | A | 256 | C | 257 | G | 258 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 9 | IL_1VW3_013 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | U | 279 | G | 280 | A | 281 | G | 282 | U | 283 | A | 284 | U | 285 | * | A | 293 | G | 294 | A | 295 | A | 296 | A | 297 | A | 298 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 10 | IL_1S72_103 | 1S72 | 0.1513 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 9 | 5S rRNA | G | 75 | G | 76 | A | 77 | G | 78 | U | 79 | A | 80 | C | 81 | * | G | 101 | G | 102 | A | 103 | A | 104 | A | 105 | C | 106 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 11 | IL_1NBS_007 | 1NBS | 0.1581 | 0 | 7x6 Sarcin-Ricin; G-bulge | B | RNase P class B | U | 165 | G | 166 | A | 167 | G | 168 | U | 169 | A | 170 | U | 171 | * | A | 138 | A | 139 | A | 140 | A | 141 | A | 142 | A | 143 | cWW | ntSH | tHH | cSH | ntWH | tHS | cWW |
| 12 | IL_1S72_090 | 1S72 | 0.1875 | 0 | 0 | LSU rRNA | A | 2689 | U | 2690 | A | 2691 | G | 2692 | U | 2693 | A | 2694 | C | 2695 | * | G | 2700 | G | 2701 | A | 2702 | A | 2703 | C | 2704 | U | 2705 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 13 | IL_3U5H_066 | 3U5H | 0.2230 | 0 | 5 | 25S rRNA | G | 1444 | U | 1445 | A | 1446 | G | 1447 | U | 1448 | A | 1449 | G | 1450 | * | C | 2354 | G | 2355 | A | 2356 | A | 2357 | A | 2358 | C | 2359 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 14 | IL_4A1B_064 | 4A1B | 0.2392 | 0 | 1 | 26S RRNA | G | 1470 | U | 1471 | A | 1472 | G | 1473 | U | 1474 | A | 1475 | G | 1476 | * | C | 2349 | G | 2350 | A | 2351 | A | 2352 | C | 2353 | C | 2354 | cWW | ntSH | tHH | cSH | tWH | tHS | cWW | |
| 15 | IL_1S72_049 | 1S72 | 0.2311 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | A | 1367 | U | 1368 | A | 1369 | G | 1370 | U | 1371 | A | 1372 | G | 1373 | * | U | 2052 | G | 2053 | A | 2054 | A | 2055 | C | 2056 | U | 2057 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAGUAC*GGACCG | 3 |
| UUAGUAC*GGACCA | 1 |
| CCAGUAA*UGACCG | 1 |
| UGAGUAG*CGAAAG | 1 |
| UUAGUAA*UGAACG | 1 |
| CCAGUAG*CGAACG | 1 |
| UGAGUAU*AGAAAA | 1 |
| GGAGUAC*GGAAAC | 1 |
| UGAGUAU*AAAAAA | 1 |
| AUAGUAC*GGAACU | 1 |
| GUAGUAG*CGAAAC | 1 |
| GUAGUAG*CGAACC | 1 |
| AUAGUAG*UGAACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUA*GACC | 4 |
| UAGUA*GAAC | 4 |
| GAGUA*GAAA | 3 |
| CAGUA*GACC | 1 |
| CAGUA*GAAC | 1 |
| GAGUA*AAAA | 1 |
| UAGUA*GAAA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_49493.5 | Only in the parent motif |
|---|---|---|---|
| IL_49493.4 Compare | IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_1S72_007, IL_1S72_020, IL_1S72_049, IL_1S72_090, IL_4A1B_064, IL_2QBG_012, IL_4IOA_096, IL_1NBS_007 | IL_1VW3_084, IL_4NVV_099, IL_4NVV_007, IL_1VW3_013 | IL_3V2F_099, IL_3V2F_007 |
Children motifs
| Child motif | Common motif instances | Only in IL_49493.5 | Only in the child motif |
|---|---|---|---|
| IL_49493.6 Compare | IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_1NBS_007, IL_1S72_007, IL_4NVV_007, IL_1S72_049, IL_1S72_020, IL_1S72_090, IL_1VW3_084, IL_4A1B_064, IL_4NVV_099, IL_2QBG_012, IL_4IOA_096, IL_1VW3_013 | IL_4CUV_068 |
- Annotations
-
- (9)
- 7x6 Sarcin-Ricin; G-bulge (H) (4)
- 7x6 Sarcin-Ricin; G-bulge (1)
- Sarcin-Ricin target in LSU H95; G-bulge (1)
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.24 | Max 0.42
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