1M82 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1M82_001 | 1/A/10:15 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_1M82_002 | 2/A/10:15 | UNCG | geometric HL_5LYS_002 HL_34617.5 | |
| HL_1M82_003 | 3/A/10:15 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_1M82_004 | 4/A/10:15 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_1M82_005 | 5/A/10:15 | UNCG | geometric HL_3U4M_001 HL_34617.5 | |
| HL_1M82_006 | 6/A/10:15 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_1M82_007 | 7/A/10:15 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_1M82_008 | 8/A/10:15 | UNCG | geometric HL_5LYS_002 HL_34617.5 | |
| HL_1M82_009 | 9/A/10:15 | UNCG | geometric HL_3U4M_001 HL_34617.5 | |
| HL_1M82_010 | 10/A/10:15 | UNCG | geometric HL_3U4M_001 HL_34617.5 | |
| HL_1M82_011 | 11/A/10:15 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_1M82_012 | 12/A/10:15 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_1M82_013 | 13/A/10:15 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_1M82_014 | 14/A/10:15 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_1M82_015 | 15/A/10:15 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_1M82_016 | 16/A/10:15 | UNCG | geometric HL_3U4M_001 HL_34617.5 | |
| HL_1M82_017 | 17/A/10:15 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_1M82_018 | 18/A/10:15 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_1M82_019 | 19/A/10:15 | UNCG | geometric HL_3U4M_001 HL_34617.5 | |
| HL_1M82_020 | 20/A/10:15 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_1M82_021 | 21/A/10:15 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_1M82_022 | 22/A/10:15 | No text annotation | geometric HL_2IZN_001 HL_48417.5 | |
| HL_1M82_023 | 23/A/10:15 | No text annotation | geometric HL_2IZN_001 HL_48417.5 | |
| HL_1M82_024 | 24/A/10:15 | UNCG | geometric HL_6DLR_002 HL_34617.5 | |
| HL_1M82_025 | 25/A/10:15 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_1M82_026 | 26/A/10:15 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_1M82_027 | 27/A/10:15 | No text annotation | geometric HL_5HR7_005 HL_50006.2 | |
| HL_1M82_028 | 28/A/10:15 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_1M82_029 | 29/A/10:15 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_1M82_030 | 30/A/10:15 | UNCG | geometric HL_3U4M_001 HL_34617.5 | |
| HL_1M82_031 | 31/A/10:15 | No text annotation | geometric HL_5U3G_001 HL_75660.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1M82_001 | 1/A/6:8, 1/A/17:20 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_51387.2 | |
| IL_1M82_032 | 2/A/7:8, 2/A/17:19 | No text annotation | ||
| IL_1M82_003 | 3/A/6:8, 3/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_004 | 4/A/6:8, 4/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_033 | 5/A/7:8, 5/A/17:19 | No text annotation | ||
| IL_1M82_006 | 6/A/6:8, 6/A/17:20 | Decoding loop with one bulged A | geometric IL_3LOA_003 IL_08770.1 | |
| IL_1M82_007 | 7/A/6:8, 7/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_008 | 8/A/6:8, 8/A/17:20 | Decoding loop with one bulged A | geometric IL_3LOA_003 IL_08770.1 | |
| IL_1M82_009 | 9/A/6:8, 9/A/17:20 | No text annotation | geometric IL_8P9A_400 IL_90351.1 | |
| IL_1M82_010 | 10/A/6:8, 10/A/17:20 | Decoding loop with one bulged A | geometric IL_3LOA_003 IL_08770.1 | |
| IL_1M82_011 | 11/A/6:8, 11/A/17:20 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_1M82_012 | 12/A/6:8, 12/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_013 | 13/A/6:8, 13/A/17:20 | Decoding loop with one bulged A | geometric IL_3LOA_003 IL_08770.1 | |
| IL_1M82_014 | 14/A/6:8, 14/A/17:20 | Decoding loop with one bulged A | geometric IL_3LOA_003 IL_08770.1 | |
| IL_1M82_015 | 15/A/6:8, 15/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_016 | 16/A/6:8, 16/A/17:20 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_1M82_017 | 17/A/6:8, 17/A/17:20 | Major groove platform with extra cWW | geometric IL_4V9F_028 IL_51387.2 | |
| IL_1M82_034 | 18/A/7:8, 18/A/17:19 | Minor groove platform | geometric IL_8P9A_267 IL_51454.3 | |
| IL_1M82_019 | 19/A/6:8, 19/A/17:20 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_1M82_020 | 20/A/6:8, 20/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_021 | 21/A/6:8, 21/A/17:20 | Decoding loop with one bulged A | geometric IL_3LOA_003 IL_08770.1 | |
| IL_1M82_022 | 22/A/6:8, 22/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_023 | 23/A/7:8, 23/A/17:19 | No text annotation | ||
| IL_1M82_035 | 24/A/7:8, 24/A/17:19 | No text annotation | ||
| IL_1M82_025 | 25/A/6:8, 25/A/17:20 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_1M82_026 | 26/A/6:8, 26/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_027 | 27/A/6:8, 27/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_1M82_036 | 28/A/7:8, 28/A/17:19 | No text annotation | ||
| IL_1M82_029 | 29/A/6:8, 29/A/17:20 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_1M82_030 | 30/A/6:8, 30/A/17:20 | Decoding loop with one bulged A | geometric IL_3LOA_003 IL_08770.1 | |
| IL_1M82_031 | 31/A/6:8, 31/A/17:20 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1M82_002 | Decoding loop with one bulged A | ||
| IL_1M82_005 | Multiple bulged bases, near cWW | ||
| IL_1M82_018 | No text annotation | ||
| IL_1M82_024 | No text annotation | ||
| IL_1M82_028 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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