Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J2A_0011/N/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_3J2A_0021/N/82:87No text annotation
Not in a motif group
HL_3J2A_0031/N/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.2
HL_3J2A_0041/N/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.2
HL_3J2A_0051/N/207:212No text annotation
Not in a motif group
HL_3J2A_0061/N/258:268No text annotation
Not in a motif group
geometric
HL_6DME_003
HL_22031.1
HL_3J2A_0071/N/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.2
HL_3J2A_0081/N/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_3J2A_0091/N/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_3J2A_0101/N/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.2
HL_3J2A_0111/N/419:424No text annotation
Not in a motif group
homologous
HL_6CZR_082
HL_03562.2
HL_3J2A_0121/N/457:475No text annotation
Not in a motif group
HL_3J2A_0131/N/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_3J2A_0141/N/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_3J2A_0151/N/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_3J2A_0161/N/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_3J2A_0171/N/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_3J2A_0181/N/840:846No text annotation
Not in a motif group
HL_3J2A_0191/N/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.2
HL_3J2A_0201/N/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_3J2A_0211/N/963:972No text annotation
Not in a motif group
HL_3J2A_0221/N/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.2
HL_3J2A_0231/N/1028:1033No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_3J2A_0241/N/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.2
HL_3J2A_0251/N/1089:1096No text annotation
Not in a motif group
geometric
HL_5TBW_024
HL_71554.2
HL_3J2A_0261/N/1134:1140No text annotation
Not in a motif group
homologous
HL_5J7L_025
HL_03562.2
HL_3J2A_0271/N/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_3J2A_0281/N/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.2
HL_3J2A_0291/N/1314:1323T-loop with 1 bulged base
Not in a motif group
geometric
HL_5DH6_002
HL_89380.2
HL_3J2A_0301/N/1356:1366No text annotation
Not in a motif group
homologous
HL_5J7L_029
HL_96366.1
HL_3J2A_0311/N/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_3J2A_0321/N/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J2A_0011/N/30:32,
1/N/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.3
IL_3J2A_0021/N/43:45,
1/N/396:399
No text annotation
Not in a motif group
geometric
IL_4Y1M_005
IL_51629.2
IL_3J2A_0031/N/47:52,
1/N/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_3J2A_0041/N/54:56,
1/N/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_3J2A_0051/N/61:63,
1/N/104:106
No text annotation
Not in a motif group
IL_3J2A_0061/N/63:66,
1/N/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_3J2A_0071/N/67:69,
1/N/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_3J2A_0081/N/70:73,
1/N/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_3J2A_0091/N/75:82,
1/N/87:95
No text annotation
Not in a motif group
IL_3J2A_0101/N/128:136,
1/N/227:233
No text annotation
Not in a motif group
IL_3J2A_0111/N/144:146,
1/N/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_3J2A_0121/N/147:153,
1/N/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_3J2A_0131/N/200:202,
1/N/215:217
No text annotation
Not in a motif group
geometric
IL_7A0S_026
IL_51629.2
IL_3J2A_0141/N/202:206,
1/N/213:215
No text annotation
Not in a motif group
IL_3J2A_0151/N/242:247,
1/N/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_3J2A_0161/N/249:253,
1/N/273:275
No text annotation
Not in a motif group
homologous
IL_6CZR_124
IL_38684.1
IL_3J2A_0171/N/292:293,
1/N/304:308
No text annotation
Not in a motif group
IL_3J2A_0181/N/293:295,
1/N/302:304
UC cWW
Not in a motif group
geometric
IL_4V88_385
IL_51629.2
IL_3J2A_0191/N/370:375,
1/N/389:391
No text annotation
Not in a motif group
IL_3J2A_0201/N/375:376,
1/N/387:389
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.3
IL_3J2A_0221/N/408:416,
1/N/427:434
No text annotation
Not in a motif group
IL_3J2A_0231/N/446:450,
1/N/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_3J2A_0241/N/450:455,
1/N/477:483
No text annotation
Not in a motif group
IL_3J2A_0251/N/504:511,
1/N/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_3J2A_0261/N/514:521,
1/N/528:537
No text annotation
Not in a motif group
IL_3J2A_0271/N/568:575,
1/N/880:882
No text annotation
Not in a motif group
IL_3J2A_0281/N/580:584,
1/N/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_3J2A_0291/N/594:596,
1/N/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.2
IL_3J2A_0301/N/597:598,
1/N/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_3J2A_0311/N/605:612,
1/N/628:633
No text annotation
Not in a motif group
IL_3J2A_0321/N/654:655,
1/N/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V9F_061
IL_50694.2
IL_3J2A_0341/N/658:659,
1/N/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_3J2A_0361/N/662:666,
1/N/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_3J2A_0371/N/684:688,
1/N/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_3J2A_0381/N/773:783,
1/N/799:806
No text annotation
Not in a motif group
IL_3J2A_0391/N/831:833,
1/N/853:855
No text annotation
Not in a motif group
geometric
IL_3R1D_012
IL_51629.2
IL_3J2A_0401/N/887:894,
1/N/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_3J2A_0411/N/922:924,
1/N/1392:1395
No text annotation
Not in a motif group
geometric
IL_4V88_417
IL_95997.1
IL_3J2A_0421/N/924:927,
1/N/1390:1392
No text annotation
Not in a motif group
geometric
IL_4V88_424
IL_95997.1
IL_3J2A_0431/N/933:935,
1/N/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_3J2A_0441/N/941:943,
1/N/1340:1342
No text annotation
Not in a motif group
IL_3J2A_0461/N/993:997,
1/N/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_47078.1
IL_3J2A_0471/N/998:999,
1/N/1041:1043
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_3J2A_0481/N/1007:1009,
1/N/1020:1022
No text annotation
Not in a motif group
IL_3J2A_0491/N/1048:1050,
1/N/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.14
IL_3J2A_0501/N/1052:1056,
1/N/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_3J2A_0511/N/1057:1058,
1/N/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_3J2A_0521/N/1060:1061,
1/N/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.14
IL_3J2A_0551/N/1124:1128,
1/N/1144:1149
No text annotation
Not in a motif group
geometric
IL_5J7L_051
IL_93211.1
IL_3J2A_0561/N/1129:1132,
1/N/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_3J2A_0571/N/1158:1163,
1/N/1173:1181
No text annotation
Not in a motif group
IL_3J2A_0581/N/1247:1254,
1/N/1283:1290
No text annotation
Not in a motif group
IL_3J2A_0591/N/1255:1258,
1/N/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_3J2A_0601/N/1259:1263,
1/N/1272:1276
Triple sheared
Not in a motif group
geometric
IL_7A0S_087
IL_56467.8
IL_3J2A_0621/N/1303:1308,
1/N/1329:1334
No text annotation
Not in a motif group
geometric
IL_5J7L_057
IL_19954.2
IL_3J2A_0641/N/1401:1404,
1/N/1497:1501
No text annotation
Not in a motif group
IL_3J2A_0651/N/1405:1407,
1/N/1494:1496
No text annotation
Not in a motif group
geometric
IL_1ZX7_006
IL_95997.1
IL_3J2A_0661/N/1407:1411,
1/N/1489:1494
No text annotation
Not in a motif group
IL_3J2A_0671/N/1412:1414,
1/N/1486:1488
No text annotation
Not in a motif group
homologous
IL_4LFB_059
IL_95997.1
IL_3J2A_0681/N/1416:1419,
1/N/1481:1484
Double sheared
Not in a motif group
homologous
IL_6CZR_169
IL_09705.9
IL_3J2A_0691/N/1430:1435,
1/N/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_3J2A_0701/N/1436:1438,
1/N/1463:1465
No text annotation
Not in a motif group
geometric
IL_2ZKO_001
IL_95997.1
IL_3J2A_0711/N/1440:1443,
1/N/1459:1461
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_031
IL_46796.1
IL_3J2A_0721/N/1445:1449,
1/N/1454:1457
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_3J2A_021No text annotation
IL_3J2A_033No text annotation
IL_3J2A_035No text annotation
IL_3J2A_045CC cWW
IL_3J2A_053No text annotation
IL_3J2A_054No text annotation
IL_3J2A_061Isolated cWH basepair
IL_3J2A_063UU cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J2A_0011/N/585:588,
1/N/651:654,
1/N/754:756
No text annotation
Not in a motif group
J3_3J2A_0021/N/826:829,
1/N/857:861,
1/N/868:874
No text annotation
Not in a motif group
J3_3J2A_0031/N/936:939,
1/N/1344:1350,
1/N/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_3J2A_0041/N/943:946,
1/N/1235:1237,
1/N/1337:1340
No text annotation
Not in a motif group
J3_3J2A_0051/N/953:962,
1/N/973:985,
1/N/1220:1228
No text annotation
Not in a motif group
J3_3J2A_0061/N/990:993,
1/N/1045:1047,
1/N/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_3J2A_0071/N/999:1006,
1/N/1023:1027,
1/N/1034:1041
No text annotation
Not in a motif group
J3_3J2A_0081/N/1061:1068,
1/N/1107:1114,
1/N/1186:1195
No text annotation
Not in a motif group
J3_3J2A_0091/N/1116:1118,
1/N/1155:1158,
1/N/1181:1184
No text annotation
Not in a motif group
J3_3J2A_0101/N/1237:1241,
1/N/1296:1303,
1/N/1334:1337
No text annotation
Not in a motif group

Problematic loops

No problematic loops


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