6PRV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6PRV_001 | 1/A/1064:1074 | No text annotation HL_20174.1 | ||
| HL_6PRV_002 | 1/A/1092:1099 | GNRA wlth tandem sheared HL_98423.2 | ||
| HL_6PRV_003 | 1/B/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_6PRV_004 | 1/B/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.2 | |
| HL_6PRV_005 | 1/C/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_6PRV_006 | 1/C/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.2 | |
| HL_6PRV_008 | 1/D/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6PRV_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6PRV_001 | 1/A/1059:1062, 1/A/1076:1079 | No text annotation IL_28482.1 | ||
| IL_6PRV_003 | 1/B/1059:1062, 1/B/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_28482.1 | |
| IL_6PRV_004 | 1/B/1087:1090, 1/B/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_6PRV_005 | 1/C/1059:1062, 1/C/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_28482.1 | |
| IL_6PRV_006 | 1/C/1087:1090, 1/C/1101:1102 | Major groove platform | geometric IL_4V9F_044 IL_48076.8 | |
| IL_6PRV_007 | 1/D/1059:1062, 1/D/1076:1079 | No text annotation | geometric IL_5D8H_002 IL_28482.1 | |
| IL_6PRV_008 | 1/D/1087:1090, 1/D/1101:1102 | No text annotation | homologous IL_6PRV_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6PRV_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6PRV_001 | 1/A/1055:1057, 1/A/1081:1087, 1/A/1102:1104 | No text annotation J3_37832.1 | ||
| J3_6PRV_002 | 1/B/1055:1057, 1/B/1081:1087, 1/B/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_37832.1 | |
| J3_6PRV_003 | 1/C/1055:1057, 1/C/1081:1087, 1/C/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_37832.1 | |
| J3_6PRV_004 | 1/D/1055:1059, 1/D/1079:1087, 1/D/1102:1104 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6PRV_005 | No text annotation |
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