8CAZ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CAZ_001 | 1/A/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_8CAZ_002 | 1/A/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_35490.2 | |
| HL_8CAZ_003 | 1/A/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_35490.2 | |
| HL_8CAZ_004 | 1/A/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_8CAZ_005 | 1/A/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_8CAZ_006 | 1/A/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_35490.2 | |
| HL_8CAZ_007 | 1/A/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_35490.2 | |
| HL_8CAZ_008 | 1/A/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.1 | |
| HL_8CAZ_009 | 1/A/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CAZ_001 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_8CAZ_002 | 1/A/953:954, 1/A/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_8CAZ_003 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_8CAZ_004 | 1/A/998:999, 1/A/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.4 | |
| IL_8CAZ_005 | 1/A/1003:1006, 1/A/1023:1037 | No text annotation Not in a motif group | ||
| IL_8CAZ_006 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.16 | |
| IL_8CAZ_007 | 1/A/1050:1052, 1/A/1206:1208 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_70707.2 | |
| IL_8CAZ_008 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_8CAZ_009 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_80097.1 | |
| IL_8CAZ_010 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.6 | |
| IL_8CAZ_011 | 1/A/1061:1063, 1/A/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_86319.2 | |
| IL_8CAZ_012 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_8CAZ_013 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_8CAZ_014 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_8CAZ_015 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_8CAZ_016 | 1/A/1255:1258, 1/A/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_8CAZ_017 | 1/A/1259:1263, 1/A/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_8CAZ_018 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CAZ_001 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_8CAZ_002 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation Not in a motif group | ||
| J3_8CAZ_003 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation Not in a motif group | ||
| J3_8CAZ_004 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_8CAZ_005 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation Not in a motif group | ||
| J3_8CAZ_006 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_8CAZ_007 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
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