Motif HL_02361.6 Version HL_02361.6 of this group appears in releases 3.54 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_5TBW_074	5TBW	0.6216	0	GNRA variation	4	5.8S rRNA	U	73	U	74	G	75	C	76	A	77	G	78	ncWW
2	HL_7A0S_004	7A0S	0.6872	0		X	LSU rRNA	C	133	G	134	U	135	A	136	A	137	G	138	cWW
3	HL_5VSU_001	5VSU	0.6227	0	GNRA variation	I	U6 snRNA	U	70	G	71	C	72	A	73	U	74	A	75	cWW
4	HL_1XJR_001	1XJR	0.2129	1	GNRA	A	s2m RNA	G	21	G	22	A	23	G	24	A	26	C	27	cWW	tSH
5	HL_7RQB_021	7RQB	0.1732	1	GNRA (H)	1A	LSU rRNA	C	641	G	642	A	643	A	644	A	646	G	647	cWW	ntSH
6	HL_5O7H_001	5O7H	0.1278	1	GNRA	A	crRNA	C	32	G	33	C	34	A	35	A	37	G	38	cWW	ntSH
7	HL_6VMY_001	6VMY	0.0000	1	GNRA	A	Cobalamin riboswitch	U	223	G	224	A	225	A	226	A	228	A	229	cWW	ntSH
8	HL_5J7L_174	5J7L	0.1507	1	GNRA	DA	LSU rRNA	A	1630	G	1631	A	1632	G	1633	A	1635	U	1636	cWW	tSH
9	HL_4AL5_001	4AL5	0.2593	1	GNRA	B	RNA (20-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW	tSH
10	HL_2XLK_001	2XLK	0.2050	1	GNRA	C	RNA (16-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW	tSH
11	HL_5LM7_001	5LM7	0.2595	1	GNRA	G	RNA (29-MER)	U	21	G	22	A	23	A	24	A	26	A	27	cWW	ntSH
12	HL_4V9F_016	4V9F	0.3348	1	GNRA	0	LSU rRNA	U	493	C	494	A	495	G	496	A	498	G	499	cWW	ntSH
13	HL_4WF9_021	4WF9	0.2947	1	GNRA	X	LSU rRNA	U	686	G	687	A	688	A	689	A	691	G	692	cWW	ntSH
14	HL_5TBW_042	5TBW	0.2914	1	GNRA	1	LSU rRNA	U	1862	G	1863	A	1864	A	1865	A	1867	G	1868	cWW	tSH
15	HL_3D0U_003	3D0U	0.4985	1	GNRA	A	Lysine Riboswitch RNA	G	121	G	122	A	123	A	124	A	126	C	127	cWW	tSH
16	HL_7A0S_046	7A0S	0.5650	1	GNRA	X	LSU rRNA	C	1797	G	1798	A	1799	A	1800	A	1802	G	1803	cWW	tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAACAG	2
CGUAUAG	2
UUGCAG	1
CGUAAG	1
UGCAUA	1
GGAGUAC	1
CGCACAG	1
UGAACAA	1
AGAGAAU	1
UGAAGAA	1
UCAGAAG	1
UGAAUAG	1
UGAACAG	1
GGAAUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAACA	4
GUAUA	2
GAAUA	2
UGCA	1
GUAA	1
GCAU	1
GAGUA	1
GCACA	1
GAGAA	1
GAAGA	1
CAGAA	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA (12)
GNRA variation (2)
(1)
GNRA (H) (1)
Basepair signature: cWW-tSH-R-R
Heat map statistics: Min 0.12 | Avg 0.45 | Max 0.93

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