Motif HL_12326.1 Version HL_12326.1 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-8	3-7
1	HL_8C3A_204	8C3A	0.9412	0	CM	SSU rRNA	C	487	C	488	C	489	U	490	U	491	U	492	U	493	G	494	G	495	cWW
2	HL_6CZR_088	6CZR	0.4261	2	1a	SSU rRNA	G	770	A	771	U	772	U	773	G	775	A	776	A	778	C	779	C	780	ncWW	ncWB
3	HL_4LFB_017	4LFB	0.3811	2	A	SSU rRNA	G	786	A	787	U	788	U	789	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
4	HL_5J7L_017	5J7L	0.3620	2	AA	SSU rRNA	G	786	A	787	U	788	U	789	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
5	HL_4V88_208	4V88	0.3634	2	A6	SSU rRNA	G	997	A	998	U	999	C	1000	G	1002	A	1003	A	1005	C	1006	C	1007	cWW
6	HL_8C3A_213	8C3A	0.3854	2	CM	SSU rRNA	G	982	A	983	U	984	C	985	G	987	A	988	A	990	C	991	C	992	cWW
7	HL_8C3A_211	8C3A	0.3119	1	CM	SSU rRNA	A	885	G	886	G	887	U	888	A	890	A	891	A	892	U	893	U	894	cWW	tSH	ntSH
8	HL_6CZR_086	6CZR	0.2163	1	1a	SSU rRNA	C	673	G	674	G	675	U	676	A	678	A	679	A	680	U	681	G	682	cWW	tSH	tSH
9	HL_4LFB_015	4LFB	0.1887	1	A	SSU rRNA	C	689	G	690	G	691	U	692	A	694	A	695	A	696	U	697	G	698	cWW	tSH	tSH
10	HL_5J7L_015	5J7L	0.1844	1	AA	SSU rRNA	C	689	G	690	G	691	U	692	A	694	A	695	A	696	U	697	G	698	cWW	tSH	tSH
11	HL_4V88_206	4V88	0.0000	1	A6	SSU rRNA	A	900	G	901	G	902	U	903	A	905	A	906	A	907	U	908	U	909	cWW		ntSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUUAGAUACC	3
CGGUGAAAUG	3
GAUCAGAUACC	2
AGGUGAAAUU	2
CCCUUUUGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGUGAAAU	5
AUUAGAUAC	3
AUCAGAUAC	2
CCUUUUG	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (11)
Basepair signature: cWW-F-F-tSH-F-F-F
Heat map statistics: Min 0.07 | Avg 0.35 | Max 0.95

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Coloring options: Nucleotide numbers

Motif HL_12326.1 Version HL_12326.1 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_12326.1 Version HL_12326.1 of this group appears in releases 3.80 to 3.86

Download

Csv

Json