HL_22280.4

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-6
1	HL_4V9K_035	4V9K	0.4071	T-loop with 2 stacked bulged bases	AW	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
2	HL_3WFS_003	3WFS	0.1995	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
3	HL_7UZ0_003	7UZ0	0.1858		A	tRNA	G	68	U	69	U	70	C	71	G	72	A	73	G	74	U	75	C	76	cWW	tWH
4	HL_4TUE_035	4TUE	0.2090	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
5	HL_4GCW_002	4GCW	0.1800	T-loop with 2 stacked bulged bases	B	TRNA(THR)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
6	HL_7EQJ_006	7EQJ	0.1648		B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
7	HL_6CU1_001	6CU1	0.2242	T-loop with 2 stacked bulged bases	A	Y RNA-like	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
8	HL_7K98_003	7K98	0.1980		C	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	U	60	C	61	C	62	cWW	tWH
9	HL_1U0B_003	1U0B	0.2090	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
10	HL_1QU2_003	1QU2	0.1961	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
11	HL_6PMO_005	6PMO	0.1790	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
12	HL_4V90_034	4V90	0.2166	T-loop with 2 stacked bulged bases	AV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
13	HL_4V87_109	4V87	0.2639		BB	TRNA-LEU	G	64	U	65	U	66	C	67	A	68	A	69	G	70	U	71	C	72	cWW	ntWH
14	HL_5B63_004	5B63	0.2111	T-loop with 2 stacked bulged bases	D	tRNA	G	954	U	955	U	956	C	957	G	958	A	959	A	960	U	961	C	962	cWW	tWH
15	HL_2AZX_006	2AZX	0.0000	T-loop with 2 stacked bulged bases	D	72-MER	G	553	U	554	U	555	C	556	G	557	A	558	A	559	U	560	C	561	ncWW	tWH
16	HL_7UQ6_003	7UQ6	0.1528		B	tRNA	G	64	U	65	U	66	C	67	G	68	A	69	G	70	U	71	C	72	cWW	tWH
17	HL_7YSE_003	7YSE	0.1746		E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
18	HL_1J2B_002	1J2B	0.2778	Other HL	C	tRNA(Val)	G	954	U	955	U	956	C	957	A	958	A	959	G	960	U	961	C	962	cWW	tWH
19	HL_2CSX_003	2CSX	0.2481	T-loop with 2 stacked bulged bases	C	RNA (75-MER)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
20	HL_1GAX_006	1GAX	0.4827	T-loop with 2 stacked bulged bases	D	TRNA(VAL)	G	952	U	953	U	954	C	955	A	956	A	957	G	958	U	959	C	960	cWW	tWH
21	HL_4V8N_145	4V8N	0.2367	T-loop with 2 stacked bulged bases	CV	tRNA	G	55	U	56	U	57	C	58	G	59	A	60	A	61	U	62	C	63	cWW	tWH
22	HL_4WJ4_003	4WJ4	0.1604	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
23	HL_7LYF_003	7LYF	0.1504		A	tRNA	G	116	U	117	U	118	C	119	A	120	A	121	G	122	U	123	C	124	cWW	tWH
24	HL_8UO6_008	8UO6	0.1666		B	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	G	111	U	112	U	113	C	114	A	115	A	116	G	117	U	118	C	119	cWW	tWH
25	HL_8UO6_004	8UO6	0.1444		A	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	G	111	U	112	U	113	C	114	A	115	A	116	G	117	U	118	C	119	cWW	tWH
26	HL_3AL0_003	3AL0	0.1650	T-loop with 2 stacked bulged bases	E	tRNAGln	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
27	HL_6UFM_003	6UFM	0.1656	T-loop with 2 stacked bulged bases	A	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	G	60	U	61	C	62	cWW	tWH
28	HL_4RDX_003	4RDX	0.1543	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
29	HL_7KJT_003	7KJT	0.1687		A	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
30	HL_2ZUE_003	2ZUE	0.1692	T-loop with 2 stacked bulged bases	B	tRNA-Arg	G	953	U	954	U	955	C	956	A	957	A	958	A	959	U	960	C	961	cWW	tWH
31	HL_5AH5_008	5AH5	0.1462	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
32	HL_2BTE_004	2BTE	0.1894	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
33	HL_4JXZ_003	4JXZ	0.1813	T-loop with 2 stacked bulged bases	B	RNA (71-MER)	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
34	HL_1J1U_003	1J1U	0.1743	T-loop with 2 stacked bulged bases	B	tRNA(Tyr)	G	554	U	555	U	556	C	557	A	558	A	559	A	560	U	561	C	562	cWW	tWH
35	HL_4YCO_003	4YCO	0.1459	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
36	HL_5AXM_003	5AXM	0.1599	T-loop with 2 stacked bulged bases	P	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
37	HL_7MRL_003	7MRL	0.1520		A	tRNA	G	56	U	57	U	58	C	59	A	60	A	61	G	62	U	63	C	64	cWW	tWH
38	HL_5X6B_003	5X6B	0.1957	T-loop with 2 stacked bulged bases	P	tRNA	G	52	U	53	U	54	C	55	A	56	A	57	A	58	U	59	C	60	cWW	tWH
39	HL_2ZZM_004	2ZZM	0.2158	T-loop with 2 stacked bulged bases	B	RNA (84-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
40	HL_5HR6_003	5HR6	0.1912	T-loop with 2 stacked bulged bases	C	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
41	HL_5HR7_006	5HR7	0.1689	T-loop with 2 stacked bulged bases	D	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
42	HL_4YYE_003	4YYE	0.1695	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
43	HL_1QTQ_003	1QTQ	0.1827	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
44	HL_7E8O_003	7E8O	0.1698		X	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
45	HL_3WQY_003	3WQY	0.1428	T-loop with 2 stacked bulged bases	C	tRNA	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	A	1659	U	1660	C	1661	cWW	tWH
46	HL_2ZZN_006	2ZZN	0.1568	T-loop with 2 stacked bulged bases	D	RNA (71-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
47	HL_8V1H_002	8V1H	0.3228		A	pre-mascRNA	G	38	U	39	U	40	C	41	A	42	A	43	A	44	U	45	C	46	cWW	tWH
48	HL_8S95_005	8S95	0.1743		C	Lysine tRNA scaffold,Poliovirus cloverleaf RNA	G	133	U	134	U	135	C	136	A	137	A	138	G	139	U	140	C	141	cWW	tWH
49	HL_4WT8_217	4WT8	0.1780	T-loop with 2 stacked bulged bases	D4	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	A	60	U	61	C	62	cWW	tWH
50	HL_4V9Q_215	4V9Q	0.1772	T-loop with 2 stacked bulged bases	DV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
51	HL_1WZ2_008	1WZ2	0.2060	T-loop with 2 stacked bulged bases	D	tRNA	G	965	U	966	U	967	C	968	G	969	A	970	A	971	U	972	C	973	cWW	tWH
52	HL_3AMU_003	3AMU	0.2225	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
53	HL_2D6F_006	2D6F	0.2283	T-loop with 2 stacked bulged bases	F	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	959	U	960	C	961	cWW	tWH
54	HL_5UD5_003	5UD5	0.2407	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	A	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
55	HL_2DRA_001	2DRA	0.2692	T-loop with 2 stacked bulged bases	B	tRNA (34-MER)	G	12	U	13	U	14	C	15	G	16	A	17	U	18	U	19	C	20	cWW	tWH
56	HL_7MDL_004	7MDL	0.2100		E	RNA (90-MER)	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	U	59\|\|A	U	60\|\|A	C	61\|\|A	cWW	tWH
57	HL_3OVB_001	3OVB	0.2471	T-loop with 2 stacked bulged bases	C	RNA (35-MER)	G	12	U	13	U	14	C	15	A	16	A	17	G	18	U	19	C	20	cWW	tWH
58	HL_3VJR_001	3VJR	0.3119	Other HL	B	tRNA CCA-acceptor	G	13	U	14	U	15	C	16	G	17	A	18	U	19	C	20	C	21	cWW	tWH
59	HL_6NWY_035	6NWY	0.3322		QV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
60	HL_2ZNI_003	2ZNI	0.3686	T-loop with 2 stacked bulged bases	C	bacterial tRNA	G	53	U	54	G	55	A	56	A	57	A	58	C	59	U	60	C	61	cWW	tWH
61	HL_6ORD_037	6ORD	0.4743		QY	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCGAAUC	13
GUUCAAGUC	13
GUUCAAAUC	12
GUUCGAGUC	7
GUUCGAUCC	5
GUUCGAUUC	4
GUUCGACUC	2
GUUCGAGCC	1
GUUCGAGAC	1
GUUAGAUUC	1
GUUCAAUUC	1
GUGAAACUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGAAU	13
UUCAAGU	13
UUCAAAU	12
UUCGAGU	7
UUCGAUC	5
UUCGAUU	4
UUCGACU	2
UUCGAGC	1
UUCGAGA	1
UUAGAUU	1
UUCAAUU	1
UGAAACU	1

Release history

Release	3.86
Date	2024-07-17
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_22280.4 Version HL_22280.4 of this group appears in releases 3.86 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_22280.4 Version HL_22280.4 of this group appears in releases 3.86 to 3.86

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Csv

Json