#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 31-3
1 HL_6F4G_0016F4G0.257210CU2-SL4U8A9G20cWW
2 HL_4V9K_0334V9K0.38668AW tRNAC13A14G22cWW
3 HL_3CUL_0023CUL0.12369CRNA (92-MER)C29A30G40cWW
4 HL_6D12_0026D120.10404Chuman 7SK RNA stem-loop 4C328A329G334cWW
5 HL_3MXH_0023MXH0.17599Rc-di-GMP riboswitchC65A660G75cWW
6 HL_6D12_0016D120.15904Chuman 7SK RNA stem-loop 4C309A310G315cWW
7 HL_3G9C_0053G9C0.13189QGLMS RIBOZYMEC17|||AA17|||BG17|||LcWW
8 HL_5FJ4_0025FJ40.10979HHMKT-7C11A12G22cWW
9 HL_8JY0_0018JY00.08839BRhoBASTC13A14G24cWW
10 HL_4C4W_0024C4W0.11979HTSKT-23C11A12G22cWW
11 HL_6LAX_0016LAX0.09579ARNA (55-MER)C15A16G26cWW
12 HL_8GXB_0018GXB0.12129ANAD+ II riboswitchC23A24G34cWW
13 HL_7VTI_0017VTI0.07344BcrRNAC15G16G21cWW
14 HL_5TBW_0065TBW0.063621 LSU rRNAC208A209G212cWW
15 HL_8C3A_0068C3A0.000021 LSU rRNAC207A208G211cWW
16 HL_8G9Z_0018G9Z0.09593ESelenocysteine transfer RNAG15||AU16||AC20||A|AcWW
17 HL_8GXB_0028GXB0.08349BNAD+ II riboswitchC23A24G34cWW
18 HL_7QR3_0027QR30.10039Cchimpanzee CPEB3 ribozymeC43A44G54cWW
19 HL_7DLZ_0017DLZ0.11839XRNA (45-MER)C18A19G29cWW
20 HL_6F4H_0026F4H0.14819DU1-SL2C6A7G17cWW
21 HL_6F4H_0016F4H0.12319BU1-SL2C6A7G17cWW
22 HL_5DDP_0025DDP0.14259A glnAC34A35G45cWW
23 HL_5AMQ_0015AMQ0.22804CRNAU3A4A9cWW
24 HL_4PKD_0014PKD0.16619VU1 snRNA stem-loops 1 and 2 (55-MER)C64A65G75cWW
25 HL_7D7V_0017D7V0.17009AnadA RNAC27A28G38cWW
26 HL_3HHN_0083HHN0.17649EClass I ligase ribozyme, self-ligation productC1004A1005G1015cWW
27 HL_1U6B_0031U6B0.27099B197-MERC1002A1003G1013cWW
28 HL_7QR4_0027QR40.12779BRNA CPEB3 ribozymeC43A44G54cWW
29 HL_5DDO_0045DDO0.16359BL-glutamine riboswitch (58-MER)C34A35G45cWW
30 HL_5DDO_0025DDO0.14519AL-glutamine riboswitch (58-MER)C34A35G45cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAUUGCACUCCG19
CAUGUGG2
CAUUGCACCUCG2
UAUUGCAGUACCG1
CAGUUGGUUAG1
CGAUUUG1
CAUAG1
CACAG1
GUGGUC1
UAGUGUA1
Non-Watson-Crick part of the motif
SequenceCounts
AUUGCACUCC19
AUGUG2
AUUGCACCUC2
AUUGCAGUACC1
AGUUGGUUA1
GAUUU1
AUA1
ACA1
UGGU1
AGUGU1

Release history

Release3.88
Date2024-09-11
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (30)
  • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.06 | Avg 0.24 | Max 0.76
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