#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-73-84-75-6
1 IL_8VTW_0158VTW0.74700AAA cross-strand stack (H)1A LSU rRNAU606U607A608A609G610*C618G619G620A621G622cWWntWHtHScWW
2 IL_5J7L_2585J7L0.78240AAA cross-strand stackDA LSU rRNAU606U607A608A609C610*G618G619G620A621G622cWWntWHtHScWW
3 IL_4V9F_0204V9F0.78630AAA cross-strand stack0 LSU rRNAC663U664A665A666C667*G679G680G681A682G683cWWntWHtHScWW
4 IL_7A0S_0137A0S0.77540AAA cross-strand stackX LSU rRNAU616U617A618A619G620*C629G630G631A632G633cWWtHScWW
5 IL_4WF9_0194WF90.75460AAA cross-strand stackX LSU rRNAU649U650A651A652G653*U663G664G665A666G667cWWntWWtHScWW
6 IL_5TBW_1185TBW0.87261UAA/GAN related1 LSU rRNAU3054U3055U3056U3057G3059*C3084G3085A3086A3087G3088cWWntWScWW
7 IL_8C3A_1278C3A0.95261UAA/GAN related (H)1 LSU rRNAC3056G3057A3058A3059G3060*U3026U3027U3028U3029G3031cWWntSWtHWcWW
8 IL_2R8S_0062R8S0.65570UAA/GAN variationRP4-P6 RNA RIBOZYME DOMAINU253G254C255A256G257*C216C217A218A219G220cWWtSHtHScWW
9 IL_4V9F_0224V9F0.27610tSH-tHW-tHS0 LSU rRNAC719G720A721G722G723*C705G706C707A708G709cWWtSHtHWtHScWW
10 IL_7A0S_0497A0S0.26590tSH-tHW-tHSX LSU rRNAU1370G1371A1372G1373G1374*C1383G1384C1385A1386G1387cWWtSHtHWtHScWW
11 IL_5J7L_2935J7L0.20110tSH-tHW-tHSDA LSU rRNAC1357G1358A1359G1360G1361*C1370G1371U1372A1373G1374cWWtSHtHWtHScWW
12 IL_4WF9_0524WF90.19490tSH-tHW-tHSX LSU rRNAU1394G1395A1396G1397G1398*C1407G1408U1409A1410G1411cWWntHWntHScWW
13 IL_5J7L_0275J7L0.19160tSH-tHW-tHSAA SSU rRNAU757C758A759G760G761*C580G581C582A583G584cWWtSHtHWtHScWW
14 IL_4LFB_0234LFB0.17030tSH-tHW-tHSA SSU rRNAU757G758A759G760G761*U580G581U582A583G584cWWtSHtHWtHScWW
15 IL_6CZR_1356CZR0.17310tSH-tHW-tHS1a SSU rRNAU741G742A743G744G745*U564G565U566A567G568cWWtSHtHWntHScWW
16 IL_4V88_4184V880.13580tSH-tHW-tHSA6 SSU rRNAU968C969A970A971G972*C627G628U629A630G631cWWtSHtHWtHScWW
17 IL_8C3A_4288C3A0.14700tSH-tHW-tHS (H)CM SSU rRNAU953C954A955A956G957*C625G626U627A628G629cWWtSHtHWtHScWW
18 IL_4V88_4364V880.11750tSH-tHW-tHSA6 SSU rRNAC990G991A992A993G994*C1010G1011U1012A1013G1014cWWtSHtHWtHScWW
19 IL_8C3A_4428C3A0.10000tSH-tHW-tHS (H)CM SSU rRNAC975G976A977A978G979*C995G996U997A998G999cWWtSHtHWtHScWW
20 IL_4LFB_0334LFB0.00000tSH-tHW-tHSA SSU rRNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
21 IL_5J7L_0375J7L0.07440tSH-tHW-tHSAA SSU rRNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
22 IL_6CZR_1456CZR0.11280tSH-tHW-tHS1a SSU rRNAC763A764A765A766C767*G783G784U785A786G787cWWtSHtHWtHScWW
23 IL_4V9F_0554V9F0.23630tSH-tHW-tHS0 LSU rRNAU1639C1640A1641A1642C1643*G1542G1543U1544C1545G1546cWWtSHtHWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAAC*GGUAG3
UUAAG*CGGAG2
UGAGG*UGUAG2
UCAAG*CGUAG2
CGAAG*CGUAG2
UUAAC*GGGAG1
CUAAC*GGGAG1
UUAAG*UGGAG1
UUUUUG*CGAAG1
CGAAG*UUUUUG1
UGCAG*CCAAG1
CGAGG*CGCAG1
UGAGG*CGCAG1
CGAGG*CGUAG1
UGAGG*CGUAG1
UCAGG*CGCAG1
UCAAC*GGUCG1
Non-Watson-Crick part of the motif
SequenceCounts
UAA*GGA5
GAG*GUA4
AAA*GUA3
GAG*GCA2
CAA*GUA2
GAA*GUA2
UUUU*GAA1
GAA*UUUU1
GCA*CAA1
CAG*GCA1
CAA*GUC1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tHW-tHS (13)
  • AAA cross-strand stack (4)
  • tSH-tHW-tHS (H) (2)
  • UAA/GAN variation (1)
  • UAA/GAN related (1)
  • UAA/GAN related (H) (1)
  • AAA cross-strand stack (H) (1)
  • Basepair signature
    cWW-tSH-tHW-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.48 | Max 0.98
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