Motif IL_17136.3 Version IL_17136.3 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8VTW_015 | 8VTW | 0.7470 | 0 | AAA cross-strand stack (H) | 1A | LSU rRNA | U | 606 | U | 607 | A | 608 | A | 609 | G | 610 | * | C | 618 | G | 619 | G | 620 | A | 621 | G | 622 | cWW | ntWH | tHS | cWW | ||
2 | IL_5J7L_258 | 5J7L | 0.7824 | 0 | AAA cross-strand stack | DA | LSU rRNA | U | 606 | U | 607 | A | 608 | A | 609 | C | 610 | * | G | 618 | G | 619 | G | 620 | A | 621 | G | 622 | cWW | ntWH | tHS | cWW | ||
3 | IL_4V9F_020 | 4V9F | 0.7863 | 0 | AAA cross-strand stack | 0 | LSU rRNA | C | 663 | U | 664 | A | 665 | A | 666 | C | 667 | * | G | 679 | G | 680 | G | 681 | A | 682 | G | 683 | cWW | ntWH | tHS | cWW | ||
4 | IL_7A0S_013 | 7A0S | 0.7754 | 0 | AAA cross-strand stack | X | LSU rRNA | U | 616 | U | 617 | A | 618 | A | 619 | G | 620 | * | C | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tHS | cWW | |||
5 | IL_4WF9_019 | 4WF9 | 0.7546 | 0 | AAA cross-strand stack | X | LSU rRNA | U | 649 | U | 650 | A | 651 | A | 652 | G | 653 | * | U | 663 | G | 664 | G | 665 | A | 666 | G | 667 | cWW | ntWW | tHS | cWW | ||
6 | IL_5TBW_118 | 5TBW | 0.8726 | 1 | UAA/GAN related | 1 | LSU rRNA | U | 3054 | U | 3055 | U | 3056 | U | 3057 | G | 3059 | * | C | 3084 | G | 3085 | A | 3086 | A | 3087 | G | 3088 | cWW | ntWS | cWW | |||
7 | IL_8C3A_127 | 8C3A | 0.9526 | 1 | UAA/GAN related (H) | 1 | LSU rRNA | C | 3056 | G | 3057 | A | 3058 | A | 3059 | G | 3060 | * | U | 3026 | U | 3027 | U | 3028 | U | 3029 | G | 3031 | cWW | ntSW | tHW | cWW | ||
8 | IL_2R8S_006 | 2R8S | 0.6557 | 0 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | U | 253 | G | 254 | C | 255 | A | 256 | G | 257 | * | C | 216 | C | 217 | A | 218 | A | 219 | G | 220 | cWW | tSH | tHS | cWW | ||
9 | IL_4V9F_022 | 4V9F | 0.2761 | 0 | tSH-tHW-tHS | 0 | LSU rRNA | C | 719 | G | 720 | A | 721 | G | 722 | G | 723 | * | C | 705 | G | 706 | C | 707 | A | 708 | G | 709 | cWW | tSH | tHW | tHS | cWW | |
10 | IL_7A0S_049 | 7A0S | 0.2659 | 0 | tSH-tHW-tHS | X | LSU rRNA | U | 1370 | G | 1371 | A | 1372 | G | 1373 | G | 1374 | * | C | 1383 | G | 1384 | C | 1385 | A | 1386 | G | 1387 | cWW | tSH | tHW | tHS | cWW | |
11 | IL_5J7L_293 | 5J7L | 0.2011 | 0 | tSH-tHW-tHS | DA | LSU rRNA | C | 1357 | G | 1358 | A | 1359 | G | 1360 | G | 1361 | * | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | cWW | tSH | tHW | tHS | cWW | |
12 | IL_4WF9_052 | 4WF9 | 0.1949 | 0 | tSH-tHW-tHS | X | LSU rRNA | U | 1394 | G | 1395 | A | 1396 | G | 1397 | G | 1398 | * | C | 1407 | G | 1408 | U | 1409 | A | 1410 | G | 1411 | cWW | ntHW | ntHS | cWW | ||
13 | IL_5J7L_027 | 5J7L | 0.1916 | 0 | tSH-tHW-tHS | AA | SSU rRNA | U | 757 | C | 758 | A | 759 | G | 760 | G | 761 | * | C | 580 | G | 581 | C | 582 | A | 583 | G | 584 | cWW | tSH | tHW | tHS | cWW | |
14 | IL_4LFB_023 | 4LFB | 0.1703 | 0 | tSH-tHW-tHS | A | SSU rRNA | U | 757 | G | 758 | A | 759 | G | 760 | G | 761 | * | U | 580 | G | 581 | U | 582 | A | 583 | G | 584 | cWW | tSH | tHW | tHS | cWW | |
15 | IL_6CZR_135 | 6CZR | 0.1731 | 0 | tSH-tHW-tHS | 1a | SSU rRNA | U | 741 | G | 742 | A | 743 | G | 744 | G | 745 | * | U | 564 | G | 565 | U | 566 | A | 567 | G | 568 | cWW | tSH | tHW | ntHS | cWW | |
16 | IL_4V88_418 | 4V88 | 0.1358 | 0 | tSH-tHW-tHS | A6 | SSU rRNA | U | 968 | C | 969 | A | 970 | A | 971 | G | 972 | * | C | 627 | G | 628 | U | 629 | A | 630 | G | 631 | cWW | tSH | tHW | tHS | cWW | |
17 | IL_8C3A_428 | 8C3A | 0.1470 | 0 | tSH-tHW-tHS (H) | CM | SSU rRNA | U | 953 | C | 954 | A | 955 | A | 956 | G | 957 | * | C | 625 | G | 626 | U | 627 | A | 628 | G | 629 | cWW | tSH | tHW | tHS | cWW | |
18 | IL_4V88_436 | 4V88 | 0.1175 | 0 | tSH-tHW-tHS | A6 | SSU rRNA | C | 990 | G | 991 | A | 992 | A | 993 | G | 994 | * | C | 1010 | G | 1011 | U | 1012 | A | 1013 | G | 1014 | cWW | tSH | tHW | tHS | cWW | |
19 | IL_8C3A_442 | 8C3A | 0.1000 | 0 | tSH-tHW-tHS (H) | CM | SSU rRNA | C | 975 | G | 976 | A | 977 | A | 978 | G | 979 | * | C | 995 | G | 996 | U | 997 | A | 998 | G | 999 | cWW | tSH | tHW | tHS | cWW | |
20 | IL_4LFB_033 | 4LFB | 0.0000 | 0 | tSH-tHW-tHS | A | SSU rRNA | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | * | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | cWW | tSH | tHW | tHS | cWW | |
21 | IL_5J7L_037 | 5J7L | 0.0744 | 0 | tSH-tHW-tHS | AA | SSU rRNA | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | * | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | cWW | tSH | tHW | tHS | cWW | |
22 | IL_6CZR_145 | 6CZR | 0.1128 | 0 | tSH-tHW-tHS | 1a | SSU rRNA | C | 763 | A | 764 | A | 765 | A | 766 | C | 767 | * | G | 783 | G | 784 | U | 785 | A | 786 | G | 787 | cWW | tSH | tHW | tHS | cWW | |
23 | IL_4V9F_055 | 4V9F | 0.2363 | 0 | tSH-tHW-tHS | 0 | LSU rRNA | U | 1639 | C | 1640 | A | 1641 | A | 1642 | C | 1643 | * | G | 1542 | G | 1543 | U | 1544 | C | 1545 | G | 1546 | cWW | tSH | tHW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAAC*GGUAG | 3 |
UUAAG*CGGAG | 2 |
UGAGG*UGUAG | 2 |
UCAAG*CGUAG | 2 |
CGAAG*CGUAG | 2 |
UUAAC*GGGAG | 1 |
CUAAC*GGGAG | 1 |
UUAAG*UGGAG | 1 |
UUUUUG*CGAAG | 1 |
CGAAG*UUUUUG | 1 |
UGCAG*CCAAG | 1 |
CGAGG*CGCAG | 1 |
UGAGG*CGCAG | 1 |
CGAGG*CGUAG | 1 |
UGAGG*CGUAG | 1 |
UCAGG*CGCAG | 1 |
UCAAC*GGUCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAA*GGA | 5 |
GAG*GUA | 4 |
AAA*GUA | 3 |
GAG*GCA | 2 |
CAA*GUA | 2 |
GAA*GUA | 2 |
UUUU*GAA | 1 |
GAA*UUUU | 1 |
GCA*CAA | 1 |
CAG*GCA | 1 |
CAA*GUC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW-tHS (13)
- AAA cross-strand stack (4)
- tSH-tHW-tHS (H) (2)
- UAA/GAN variation (1)
- UAA/GAN related (1)
- UAA/GAN related (H) (1)
- AAA cross-strand stack (H) (1)
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.48 | Max 0.98
Coloring options: